User: jevanveen

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jevanveen10
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Posts by jevanveen

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Single cell RNA-seq guided correlation analysis
... Thank you - very helpful insights ...
written 6 days ago by jevanveen10
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Comment: C: Single cell RNA-seq guided correlation analysis
... Thank you - I was playing with WGCNA a bit before posting this, but it seems to do whole transcriptome clustering, whereas I want to specifically start with an a priori list that I took from an scRNA seq paper to asses coordinate regulation of cell differentiation state. It kind of sounds like this ...
written 21 days ago by jevanveen10
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Answer: A: How to analyse RNA-Seq data with JUST geneID and TPM values
... DESeq2 is probably what you want. It does a fine job of giving you DE genes starting with TPM values generated by Kallisto or Salmon. There's a user friendly interface available (free) at usegalazy.org ...
written 22 days ago by jevanveen10
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Single cell RNA-seq guided correlation analysis
... I would very much appreciate help with what is probably a pretty basic question. First, the question stated as succinctly as I can: ** Using an a priori list of genes, what is the best way to: 1. Test if their expressions correlate with one another across different RNA- SEQ samples? 2. Rank all ...
basics correlation rna-seq written 22 days ago by jevanveen10 • updated 22 days ago by munizmom60
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How to add tdtomato to mouse genome for RNA seq analysis
... Hello all! I am currently analyzing some RNA seq data derived from mice that express the reporter, tdtomato, under an endogenous promoter. I'd like to get read counts for tdtomato, but obviously it isn't part of the mouse transcriptome, and therefore Salmon doesn't map reads to it. From what I ca ...
salmon rna-seq written 4 weeks ago by jevanveen10

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