User: Adam Cornwell

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Adam Cornwell420
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Posts by Adam Cornwell

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Can FACSDiva be used without its GUI?
... I'm not sure if this is the best forum for that inquiry (since it's more about a particular instrument than general bioinformatics-related data). I have seen FACSDiva before though, and I think there's a way to create experiment templates for that purpose? It may also depend on the version of the so ...
written 3.6 years ago by Adam Cornwell420
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Comment: C: Circos:- How To Make Circos Histogram Image Using This Data
... This looks pretty good, now we have a we Circos-like options in R. Thanks! ...
written 5.2 years ago by Adam Cornwell420 • updated 7 weeks ago by RamRS25k
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Case/control SNP/CNV analysis tools for small set of Illumina SNP arrays?
... Hi, we have a small set of 12 Illumina Human Omni SNP arrays we've run. I'm just getting into this after dealing with gene expression for a long time, and SNP array analysis is a different world. We have a few samples from disease and a few from control, all independent samples (no families). I know ...
array snp cnv written 5.2 years ago by Adam Cornwell420
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Appropriate To Use Roc To Evaluate Validation Of Microarrays With Qpcr?
... Hello, Somewhere before I think I have seen ROC used as a method of evaluating the success of validating a microarray experiment via qPCR. It seems like this could work, if you view the PCR results as a source of true positives/true negatives. That's not necessarily the case though, and so I have s ...
microarray pcr written 6.2 years ago by Adam Cornwell420 • updated 5.3 years ago by Biostar ♦♦ 20
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Automated Quality Analysis Pipeline For Affymetrix Gene St Arrays?
... I've been using automated quality report tools such as affyAnalysisQC for looking at array dataset quality for some time now. However, most packages/systems for that purpose (in Bioconductor or otherwise) don't support the whole transcript-style Gene ST arrays. In the case of R packages, most of the ...
quality analysis microarray affymetrix written 6.3 years ago by Adam Cornwell420 • updated 6.0 years ago by Charles Warden7.5k
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Comment: C: Methods For Comparing Microarrays From Different Datasets
... Thanks, ultimately it's about soliciting for suggestions to deal with such a scenario. Really seems like I need to practice refining effective questions! ...
written 6.5 years ago by Adam Cornwell420
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Methods For Comparing Microarrays From Different Datasets
... I often run into situations which fall outside the realm of most existing microarray meta-analysis solutions- where I have two sets of arrays to compare (say, RNA from a particular cell type vs whole tissue), but the two sets are from different datasets and sometimes different platforms. Most of the ...
normalization differential-expression microarray written 6.5 years ago by Adam Cornwell420 • updated 6.0 years ago by Biostar ♦♦ 20
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Answer: A: Amd Or Intel Based Workstation For Bioinformatics?
... Per-core performance is higher on the Intel side of things. Per-core price for AMD systems will almost always be lower, so if you're going to run something that parallelizes well, you could still be better off with more cores for the money on an AMD system. Memory performance is probably pretty simi ...
written 6.7 years ago by Adam Cornwell420
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Comment: C: Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
... I'm pretty sure what I'm asking about isn't supported in the main Galaxy package, but it seems like something that could feasibly have already been developed by a third party. Basically, does there exist anything to allow a local Galaxy instance to act as a front-end for kicking off analysis on clus ...
written 6.8 years ago by Adam Cornwell420
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Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
... I've been looking at putting a local Galaxy instance together so that we have a platform accessible to lab members for viewing data when our NGS samples start rolling in. I've got a single server for this right now, which obviously would be a major bottleneck for trying to do an end-to-end analysis ...
ngs galaxy cloud written 6.8 years ago by Adam Cornwell420 • updated 4.9 years ago by loic.bourg0

Latest awards to Adam Cornwell

Popular Question 5.2 years ago, created a question with more than 1,000 views. For Automated Quality Analysis Pipeline For Affymetrix Gene St Arrays?
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Methods For Comparing Microarrays From Different Datasets
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Limma Lmfit/Ebayes And P-Values Of 0?
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Cdf For Affymetrix Mouse Gene St 2.0?
Student 5.2 years ago, asked a question with at least 3 up-votes. For Methods For Comparing Microarrays From Different Datasets
Popular Question 5.2 years ago, created a question with more than 1,000 views. For Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
Appreciated 6.2 years ago, created a post with more than 5 votes. For Wgcna Network Construction Issues & Best Practices?
Appreciated 6.2 years ago, created a post with more than 5 votes. For Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
Good Question 6.2 years ago, asked a question that was upvoted at least 5 times. For Wgcna Network Construction Issues & Best Practices?
Good Question 6.2 years ago, asked a question that was upvoted at least 5 times. For Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
Popular Question 6.2 years ago, created a question with more than 1,000 views. For Wgcna Network Construction Issues & Best Practices?
Popular Question 6.2 years ago, created a question with more than 1,000 views. For Cdf For Affymetrix Mouse Gene St 2.0?
Student 6.2 years ago, asked a question with at least 3 up-votes. For Wgcna Network Construction Issues & Best Practices?
Student 6.2 years ago, asked a question with at least 3 up-votes. For Integrating A Local Galaxy Instance With Cluster Or Cloud Compute Resources?
Student 6.2 years ago, asked a question with at least 3 up-votes. For Cell Type Marker Databases?

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