User: 3335098459

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333509845910
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Posts by 3335098459

<prev • 9 results • page 1 of 1 • next >
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(Closed) R CMD check
... Hi everyone I have written some codes in R for my personal use. The package successfully installed on my personal laptop (where I have written those commands) and working correctly. But when I distributed it to my other colleagues, this package is not installing and returned these errors. > In ...
R written 21 days ago by 333509845910
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Codon Usage analysis of whole genomes
... I am new to bioinformatics. So if these questions seem to you a bit childish please forgive me. I have two queries. I am intending to perform a codon usage analysis followed by correspondence analyses for multiple microbial whole genomes of one bacterial species to find the association with the is ...
genome R sequence written 10 weeks ago by 333509845910
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KEGG Annotation in R
... Hello, I have a set of genes (Amino acid sequences). I want to find the Kegg based functional annotations or KO ids. Is there any KEGG database available for download? I want to use blast with that database. Additionally, I was looking for R package that can help me in this regard. Hope so I have ...
genome R alignment written 4 months ago by 333509845910
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Run Windows CMD commands from R
... Hello, I need to design a function in R that can direct the windows CMD to run a command. The command is: "copy *.txt combinedfiles.txt" I used this command system("cmd.exe copy *.txt combinedfiles.txt") I am a beginner at R-Studio. So, if this question sounds childish to you please par ...
genome R written 6 months ago by 333509845910 • updated 6 months ago by zx87546.2k
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Reshaping / Re-arranging the data
... As I am new to R, this question may seem to you piece of a cake. I have a data in txt format. The first column has Cluster Number and the second column has names of different organisms. For example: 1. 0 org4|gene759 2. 1 org1|gene992 3. 2 org1|gene1101 4. 3 org4|gene757 5. 4 org1|gene1702 ...
genome R written 8 months ago by 333509845910 • updated 8 months ago by munizmom60
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Comment: C: OrthoMCL VS MEGA aligned clusters
... I am trying to compare multiple genomes of different strains. As there is high number of protein sequences, I am looking for a less time-consuming protocol. ...
written 9 months ago by 333509845910
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Comment: C: OrthoMCL VS MEGA aligned clusters
... Yes. you are right. My aim is to compare different genomes belonging to same species (different strains actually). Thank you for quick response and explanation. ...
written 9 months ago by 333509845910
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OrthoMCL VS MEGA aligned clusters
... Hi there, I am new to bio-informatics and R. I have been reading the posts on this website from last few days and it has created some confusions to my previous knowledge. 1. What is the difference between the dendrogram generated by OrthoMCL and MEGA based clustal/muscle? 2. For **strains related ...
cluster R alignment written 9 months ago by 333509845910 • updated 9 months ago by toralmanvar730
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Read, concatenate and merge the multiple fasta sequence files in R
... Hi everyone, I am using Windows and R-Studio. I am looking for a particular R-package or commands to read, write, concatenate and relabel the sequences in a fasta formatted file. I know other GUI softwares but I need to perform this in R. Please help me. Regards Awan ...
genome R sequence written 9 months ago by 333509845910 • updated 9 months ago by ATpoint12k

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