User: prnsml

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prnsml0
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Posts by prnsml

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Answer: A: Problem parsing interval list file to GenomicsDBImport in GATK4
... This command works for me #!/bin/sh while read i; do java -Xmx6g -jar $GATK GenomicsDBImport --sample-name-map samples.txt --genomicsdb-workspace-path DB_$i -L $i; done < contigs.list where samples.txt contains `tab` and contigs.list includes one contig name per line: Contig0 ...
written 11 months ago by prnsml0 • updated 11 months ago by RamRS20k

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