User: nkhan.mscs15seecs

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Posts by nkhan.mscs15seecs

<prev • 26 results • page 1 of 3 • next >
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Comment: C: Direct vs Indirect annotation
... You are absolutely right. I also want this question be closed. ...
written 7 days ago by nkhan.mscs15seecs20
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Direct vs Indirect annotation
... Can somebody please explain to me what is direct and indirect annotation of a term or gene in GO(Gene Ontology) DAG(Directed Acyclic Graph) with the help of some concrete examples? ...
gene ontology written 8 days ago by nkhan.mscs15seecs20
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Direct vs Indirect annotations of a term in GO (Gene Ontology) Database
... Reference to the [Paper](https://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7454750&tag=1). Following concepts are introduced. 1. For a particular protein a number of terms are retrieved from the GO(Gene Ontology) Database. 2. For each term its ancestors are combined to form a set usi ...
tree go written 27 days ago by nkhan.mscs15seecs20 • updated 18 days ago by Biostar ♦♦ 20
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Comment: C: P-value calculation for Gene Ontology Terms
... Actually I have no problem understanding basics of p-value my only problem is what data here is and how they calculated p-value in this GO case particularly? ...
written 5 weeks ago by nkhan.mscs15seecs20
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P-value calculation for Gene Ontology Terms
... In many studies like [This(Table1)][1] I have seen p-values are calculated for Gene Ontology Terms. Can somebody give me numerical calculation using a small example how these p-values are calculated for GO terms? [1]: http://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.10 ...
p-value gene ontology written 5 weeks ago by nkhan.mscs15seecs20 • updated 5 weeks ago by EagleEye5.6k
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Comment: C: Manhattan Plot in GWAS (How P values are calculated using SNP dataset)
... Thanks for your patient and precise reply of my stupid questions as Now I have got this. I really like your kind of gentle people.please also refer me some basic text that I should read as a beginner to understand these basic concepts in detail? ...
written 6 weeks ago by nkhan.mscs15seecs20
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Comment: C: Manhattan Plot in GWAS (How P values are calculated using SNP dataset)
... So it means if we say that a particular set of dots are looking significant as they are above a certain threshold then it means we are talking about that multiple SNPs are getting significant not just one right? ...
written 6 weeks ago by nkhan.mscs15seecs20
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Comment: C: Manhattan Plot in GWAS (How P values are calculated using SNP dataset)
... It means I have not got the correct understanding of SNP data here. Can you show me how for example two dots per SNP are calculated? ...
written 6 weeks ago by nkhan.mscs15seecs20
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Comment: C: Manhattan Plot in GWAS (How P values are calculated using SNP dataset)
... ![enter image description here][2] [2]: https://s15.postimg.cc/5apee69mz/SNP_Plot.png ...
written 6 weeks ago by nkhan.mscs15seecs20 • updated 6 weeks ago by WouterDeCoster31k
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Comment: C: Manhattan Plot in GWAS (How P values are calculated using SNP dataset)
... then how there are multiple dots corresponding to one SNP on horizontal axis? ...
written 6 weeks ago by nkhan.mscs15seecs20

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