User: nkhan.mscs15seecs

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Posts by nkhan.mscs15seecs

<prev • 34 results • page 1 of 4 • next >
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Simulation of a 1.25-fold change using Poisson Data
... Reference to [paper][1] I have following excerpt. 100,000 random counts were generated from a Poisson distribution with a mean of 20, simulating an RNA-Seq experiment consisting of 10,000 transcripts, each with 10 replicate measurements. A Fisher exact test was performed on the sum of all counts ...
simulation rna-seq written 7 days ago by nkhan.mscs15seecs30
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Comment: C: Toxins ion channel inhibitors
... Thank you very much indeed! ...
written 28 days ago by nkhan.mscs15seecs30
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Comment: C: Toxins ion channel inhibitors
... Please read my post I have written what I want to do. I told you I want to search toxin protein which are .................. Then I would list them in an excel sheet . Just an exercise to how to use this uniprot resource and make use of effective query because this search will be done using advanced ...
written 29 days ago by nkhan.mscs15seecs30
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Toxins ion channel inhibitors
... I want to search "toxin" proteins which are classified as "ion channel inhibitors". These proteins can be classified into four(04) groups 1. chloride channel inhibitors 2. calcium channel inhibitors 3. potassium channel inhibitors 4. sodium channel inhibitors Please suggest me how can I find these ...
toxins unitprot proteins written 29 days ago by nkhan.mscs15seecs30 • updated 28 days ago by finswimmer6.2k
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How to download ABIDE preprocessed dataset?
... Can someone please share how could I download preprocessed dataset from [ABIDE][1] . The link has information about how to download dataset and [Script][2] is also available but it does not work and gives lot of errors related to syntax. **My Effort** The script I mentioned above had errors becaus ...
abidedataset fmri written 4 weeks ago by nkhan.mscs15seecs30
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How to calculate a PSSM(Position Specific Scoring matrix) of a protein sequence
... Can somebody give me an example that If I have data of protein sequences and for a specific protien sequence of length L since protein sequence length varies, How can I build a PSSM(Position Specific Scoring Matrix) of order L x 20 that is rows=L for Protein Sequence length and Cols=20 for 20 amino ...
matrix protein written 6 weeks ago by nkhan.mscs15seecs30
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GO(Gene Ontology) IDs for Homo sapiens in all three ontologies
... Can somebody please tell me where I can download full list of GO IDs of homo sapiens. I actually want to create two tables of following structure Table1 GO ID Name Table2 (GO IDs) Sr Biological Molecular Cellular where I can have full list? rega ...
homosapiens go written 6 weeks ago by nkhan.mscs15seecs30 • updated 6 weeks ago by b.nota5.0k
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(Closed) How to download database of Human protein sequences with sub cellular locations?
... How Can I download Human Protein Database for every protein sequence with its sub cellular locations. I know there is this famous site UniProt where all protein database is located and can be downloaded in fasta format. Also at that site there is information of protein sub cellular locations. Is t ...
sub cellular locations proteins human download written 7 weeks ago by nkhan.mscs15seecs30 • updated 7 weeks ago by Pierre Lindenbaum113k
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Comment: C: Direct vs Indirect annotation
... You are absolutely right. I also want this question be closed. ...
written 10 weeks ago by nkhan.mscs15seecs30
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Direct vs Indirect annotation
... Can somebody please explain to me what is direct and indirect annotation of a term or gene in GO(Gene Ontology) DAG(Directed Acyclic Graph) with the help of some concrete examples? ...
gene ontology written 10 weeks ago by nkhan.mscs15seecs30

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