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How to handle KEGG orthologous IDs involved multiple pathways
KEGG annotation metagenome functional gene
6 weeks ago by young_bioinformatician ▴ 170
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353
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Comment: Comment: Further Reducing Gene Ontology list
4 months ago by young_bioinformatician ▴ 170
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439
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Comment: Comment: How to combine eggnog and interproscan
4 months ago by young_bioinformatician ▴ 170
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2
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439
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How to combine eggnog and interproscan
pfam eggnog blast interproscan annotation
4 months ago by young_bioinformatician ▴ 170
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3.0k
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Comment: Comment: Paired end reads merged to single end for mapping - should i allow multi-overlap
4 months ago by young_bioinformatician ▴ 170
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470
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Comment: Comment: long view SNPs in vcf file
4 months ago by young_bioinformatician ▴ 170
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470
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Comment: Comment: long view SNPs in vcf file
4 months ago by young_bioinformatician ▴ 170
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470
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long view SNPs in vcf file
Calling Variant freebayes SNP vcftools bcftools
4 months ago by young_bioinformatician ▴ 170
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387
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Comment: Comment: Change ploidy level in vcf file
updated 5 months ago by 2.6k • written 5 months ago by ▴ 170
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387
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Change ploidy level in vcf file
vcf freebayes SNP vcftools bcftools
updated 5 months ago by 2.6k • written 5 months ago by ▴ 170
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161
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How to manage GO terms for metagenomics
GO metagenome annotation ontology Gene functions
5 months ago by young_bioinformatician ▴ 170
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872
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Comment: Comment: How to create a basic GUI for rna seq pipeline
5 months ago by young_bioinformatician ▴ 170
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752
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Comment: Comment: Fasta headers column spilt or selection
6 months ago by young_bioinformatician ▴ 170
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322
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Comment: Comment: variant analysis using Freebayes
6 months ago by young_bioinformatician ▴ 170
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260
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Comment: Comment: Error loading a bam + bai files in IGV
6 months ago by young_bioinformatician ▴ 170
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464
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Comment: Comment: When to use Genome assembly and when to use short read alignment for consensus g
6 months ago by young_bioinformatician ▴ 170
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757
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Comment: Comment: PLINK - individual variance with the SNPs weights
6 months ago by young_bioinformatician ▴ 170
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757
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Comment: Comment: PLINK - individual variance with the SNPs weights
6 months ago by young_bioinformatician ▴ 170
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1
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757
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Comment: Comment: PLINK - individual variance with the SNPs weights
6 months ago by young_bioinformatician ▴ 170
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757
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PLINK - individual variance with the SNPs weights
plink snp variant population pca
6 months ago by young_bioinformatician ▴ 170
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455
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Comment: Comment: Normalization after Trimmomatic ?
9 months ago by young_bioinformatician ▴ 170
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198
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How to (or not to) interpret the annotation abundance result from metagenome
gene abundance GO annotation metagenome
9 months ago by young_bioinformatician ▴ 170
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927
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Answer: Answer: MG RAST for Eukaryota
10 months ago by young_bioinformatician ▴ 170
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389
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Comment: Comment: Considering two and more variation in polyploidy
10 months ago by young_bioinformatician ▴ 170
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389
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Comment: Comment: Considering two and more variation in polyploidy
11 months ago by young_bioinformatician ▴ 170
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389
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Considering two and more variation in polyploidy
Population SNP Variant genomic Calling
10 months ago by young_bioinformatician ▴ 170
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409
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Comment: Comment: PCA biplot for SNPs data
13 months ago by young_bioinformatician ▴ 170
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409
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PCA biplot for SNPs data
SNP Calling PCA Variant
13 months ago by young_bioinformatician ▴ 170
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678
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Comment: C: IDBA-UD Output Question
2.7 years ago by young_bioinformatician ▴ 170
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822
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Comment: C: Missing pseudogenes in annotation report
2.7 years ago by young_bioinformatician ▴ 170
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822
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Comment: C: Missing pseudogenes in annotation report
2.7 years ago by young_bioinformatician ▴ 170
1
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1
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822
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Comment: C: Missing pseudogenes in annotation report
2.7 years ago by young_bioinformatician ▴ 170
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1.3k
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Comment: A: Comparing SPAdes assemblies to each other?
2.7 years ago by young_bioinformatician ▴ 170
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883
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Comment: C: Why one genome assembly is more fragmented than others?
2.7 years ago by young_bioinformatician ▴ 170
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1.4k
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Answer: A: Display bootstraps on tree RAxML-NG
2.7 years ago by young_bioinformatician ▴ 170
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673
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Comment: C: Find transcripts of one species in RNA-assembly
2.7 years ago by young_bioinformatician ▴ 170
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1
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684
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Answer: A: reorder contigs into scaffold?
2.8 years ago by young_bioinformatician ▴ 170
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1.8k
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Comment: C: Is the ssGSEA enrichment score affected by other samples in the analysis group?
2.8 years ago by young_bioinformatician ▴ 170
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673
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Comment: C: Find transcripts of one species in RNA-assembly
2.8 years ago by young_bioinformatician ▴ 170
2
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0
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1.9k
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Answer: A: RAxML generate best tree from 500 bootstrap trees
2.8 years ago by young_bioinformatician ▴ 170
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1
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590
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Comment: C: Constructing reference-based draft genome
2.8 years ago by young_bioinformatician ▴ 170
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3
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590
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Constructing reference-based draft genome
Assembly genome next-gen
2.8 years ago by young_bioinformatician ▴ 170
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483
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Comment: C: Local BLAST search
2.8 years ago by young_bioinformatician ▴ 170
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810
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Answer: A: script bash for counting
2.8 years ago by young_bioinformatician ▴ 170
1
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0
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660
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Answer: A: KEGG mapping for larger sample size (100) ?
2.8 years ago by young_bioinformatician ▴ 170
5
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1
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4.9k
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Answer: A: How to filter BLAST results by query coverage? How to analyze large BLAST output
2.8 years ago by young_bioinformatician ▴ 170
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2.1k
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Comment: A: Direction in GSEA in clusterProfiler
2.8 years ago by young_bioinformatician ▴ 170
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524
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Answer: A: Make a reference transcriptome for nonmodel organism
2.8 years ago by young_bioinformatician ▴ 170
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1.9k
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Comment: C: Gene alignment with IGV
2.8 years ago by young_bioinformatician ▴ 170
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2.4k
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Comment: C: Too many unmapped reads - STAR alignment
2.8 years ago by young_bioinformatician ▴ 170
65 results • Page 1 of 2
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