User: fatin nadhirah

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Posts by fatin nadhirah

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Comment: C: How to make a Scatterplot and a DE gene list from ballgown results?
... How to get this result? ...
written 4 months ago by fatin nadhirah0
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Comment: C: ERROR:Encountered internal Bowtie 2 exception (#1) & hisat-align exited with val
... i did but it still appear command not found :( ...
written 4 months ago by fatin nadhirah0
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Comment: C: ERROR:Encountered internal Bowtie 2 exception (#1) & hisat-align exited with val
... I've already installed samtools and export the PATH but it still says command not found. What should i do? ...
written 4 months ago by fatin nadhirah0
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ERROR:Encountered internal Bowtie 2 exception (#1) & hisat-align exited with value 1
... I try to run and follow this tutorial https://www.bioinformatics.babraham.ac.uk/training/RNASeq_Course/Analysing%20RNA-Seq%20data%20Exercise.pdf but i got an error. Help me pls! mfrlab:Desktop firdausraih$ hisat -x BP_index --known-splicesite-infile BP_splice_sites.txt -p 2 -U T1_1_d.fq, T1_2_d.fq, ...
hisat rna-seq written 4 months ago by fatin nadhirah0 • updated 4 months ago by WouterDeCoster32k
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Comment: C: Cannot run FASTQC on terminal
... How to compile? I don't really understand that part And if i may ask, how to install 'module'? ...
written 5 months ago by fatin nadhirah0
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Comment: C: Cannot run FASTQC on terminal
... Link: https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip Command line: mfrlab:raw.reads firdausraih$ ls FastQC QA QC Tophat data mfrlab:raw.reads firdausraih$ cd FastQC/ mfrlab:FastQC firdausraih$ ls Configuration README.txt fastqc_icon.ico r ...
written 5 months ago by fatin nadhirah0 • updated 5 months ago by WouterDeCoster32k
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Cannot run FASTQC on terminal
... 1) Hi, Im using Mac OS and I'm having difficulty to run fastqc using terminal. It shows like this: This is the source distribution of FastQC. You need to get the compiled version if you want to run the program i've downloaded many time including the zip file. What should i do? 2) Another proble ...
module fastqc written 5 months ago by fatin nadhirah0

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