User: jav

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jav0
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Posts by jav

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Comment: C: Adapter Sequence for HiSeq4000; Trimmomatic
... Hi @ATpoint. Thanksomuch for your quick reply and so I have found the adapters I'm looking for at that time. ...
written 2.6 years ago by jav0
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joinmap output from genotypes program of Stacks
... I'm running the genotypes program of Stacks1.46 to generate joinmap output files. This joinmap output file is supposed to be inputted in the JoinMap Software to generate a linkage map. Now, the output from the genotypes program run I got were 4 files: batch_1.genotypes_2.loc batch_1.genotypes_2.txt ...
linkage mapping stacks ddrad joinmap written 2.6 years ago by jav0
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stacks denovo output directory can't be read in running genotypes program
... I am currently running the genotypes program of Stacks for the purpose of generating joinmap file primarily to ultimately create a linkage map: sample script I did: $STACKS_DIR/genotypes -b 1 -P $IN_GEN -r 2 -t F2 -o joinmap -o rgtl -o onemap But I get this error: ./genotypes.sh: line 7: =/home/m ...
linkage map stacks ddrad genotypes joinmap written 2.6 years ago by jav0
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Adapter Sequence for HiSeq4000; Trimmomatic
... Hi guys! Just wondering if is anyone here knows what is the adapter sequence used for Illumina HiSeq4000? And if that adapter sequence is included in the list of the adapters of Trimmomatic? Thanks. ...
next-gen snp sequencing written 2.7 years ago by jav0 • updated 2.7 years ago by igor12k

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