User: tweiskittel94

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Posts by tweiskittel94

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Comment: C: Fold Change with DESeq2
... there are several more columns, but that is the first pair with TCGA-E9-A3QA-01A-61R-A22K-07 being tumor and TCGA-EW-A1P6-01A-11R-A144-07 being tissue normal ...
written 21 months ago by tweiskittel940
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Comment: C: Fold Change with DESeq2
... TCGA-E9-A3QA-01A-61R-A22K-07 TCGA-EW-A1P6-01A-11R-A144-07 ENSG00000000003 2467 2692 ENSG00000000005 3 4 ENSG00000000419 2513 ...
written 21 months ago by tweiskittel940 • updated 21 months ago by WouterDeCoster43k
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Fold Change with DESeq2
... I have a very simple matrix of pairs of columns showing tumor RNAseq raw counts and normal tissue raw counts and rows with Ensembl IDs. I am trying to use the DESeq2 to get fold change between tumor and normal tissue. All of the DESeq tutorials or examples have much more complicated matrices with ...
R deseq2 rna-seq written 21 months ago by tweiskittel940
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TCGA BRCA Solid Tissue Normal Filter
... I am a new TCGA user and need to download all the solid tissue normal transcriptome files from the TCGA BRCA project. I have been able to find all the solid tissue normal samples (there seems to be about 70) through a really round about way. What is the easiest way to find all the TCGA BRCA Solid Ti ...
tcga solid tissue normal written 22 months ago by tweiskittel940 • updated 22 months ago by shoujun.gu370

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