User: massonix

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massonix20
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Posts by massonix

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Should I aggregate expression matrices from cell hashed and non-hashed libraries with cellranger?
... Dear all, We performed a scRNA-seq experiment using the [cell hashing](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-018-1603-1) protocol devolped by the Satija lab. This allows us to 'overload' the 10X Chip Channel, knowing that we will be able to detect most doublets in our data ...
scrna-seq 10x cellranger rna-seq written 4 weeks ago by massonix20
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Error in FindTransferAnchors Seurat
... I have a scRNA-seq that I want to annotate using the Linnarson's brain cell atlas. To that end, I am using the Label Transfer pipeline from Seurat, which you can find here: https://satijalab.org/seurat/v3.0/pancreas_integration_label_transfer.html . This is my code: # Connect to loom o ...
scrna-seq seurat written 10 months ago by massonix20

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