User: maxwells_daemon

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Posts by maxwells_daemon

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Circos is taking more than a day to run. Need help with understanding how to write the conf files to reduce runtime.
... Hey everyone, I am using Circos to visualize a combination of two genomes, and I am also using the same laptop to run memory intensive programs. Currently, Circos is taking more than a day to go through all the configuration files. I honestly have no clue why, and no one in my laboratory group is ...
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This is a file used in the Circos software. Can someone help me understand what it means?
... This is a snippet of code that is used as a base case for running the software Circos on. This is the link to said file: https://github.com/vigsterkr/circos/blob/master/data/karyotype.human.txt. Can anyone explain to me the differences between chromosomes and bands and what the file type is readin ...
software file type circos sequencing written 6 months ago by maxwells_daemon10
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Comment: C: I need to understand how to convert a GBK and FAA files to the files that Circos
... I want to show an outer ring with the genome, inner ring with aligned toxin-antitoxin pairs, and prophage regions. I used CGView before, but I need to use Circos. ...
written 6 months ago by maxwells_daemon10
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I need to understand how to convert a GBK and FAA files to the files that Circos accepts.
... I need help understanding how to convert these file types to the template that Circos accepts. Please comment and I will provide more detail. Thank you. The types of files Circos accepts are of the following notation: chr - hs1 1 0 247249719 green chr - hs2 2 0 242951149 green chr - ...
genome tutorial alignment circos written 6 months ago by maxwells_daemon10
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Need help debugging Circos output.
... Howdy, I am running my Circos .conf file on MacOS, and this is the output I am receiving. Can anyone help me out with understanding why I am having issues with my Circos conf file specifically with regards to the housekeeping.conf file? I also am not sure where the parent block has been defined. ...
genome visualization circos written 6 months ago by maxwells_daemon10

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