User: neutrinoscientist

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Posts by neutrinoscientist

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Phylogeny tree from a set of taxa
... I have set of taxa and I want to generate dynamically a phylogeney tree file based on a reference database. EX. the users will choose the set of taxa that they're interested in, from ~1000 taxa and the I should create the corresponding phylogeney tree. are there any R packages to create a tree fro ...
taxa species phylogenetic tree newick taxonomy written 3 days ago by neutrinoscientist0 • updated 2 days ago by Jean-Karim Heriche15k
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Phylogeny Tree based on SILVA classification
... Hello, have a list of species (taxa) and i want to generate a phylogeny tree using SILVA. How to do this? any help please. Thanks. ...
taxonomy written 3 days ago by neutrinoscientist0 • updated 3 days ago by Chirag Parsania700
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Comment: C: How to convert tree in phylip format into newick format
... I have a tree in phylip format and i want to convert it to newick format ...
written 10 days ago by neutrinoscientist0
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Comment: C: How to convert tree in phylip format into newick format
... not working Traceback (most recent call last): File "convert_trees.py", line 9, in Phylo.convert(infile,intype, outfile, outtype) File "/home/maria/.local/lib/python2.7/site-packages/Bio/Phylo/_io.py", line 90, in convert return write(trees, out_file, out_format, **kwargs) File "/hom ...
written 11 days ago by neutrinoscientist0
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Comment: C: How to convert tree in phylip format into newick format
... python convert_trees.py phyliptree.phy phylip mytree.nwk newick ...
written 11 days ago by neutrinoscientist0 • updated 11 days ago by h.mon15k
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Comment: C: How to convert tree in phylip format into newick format
... am so sorry for adding this as an answer. sorry its just in mistake. its still give error. Traceback (most recent call last): File "convert_trees.py", line 9, in Phylo.convert(infile,intype, outfile, outtype) File "/home/x/.local/lib/python2.7/site-packages/Bio/Phylo/_io.p ...
written 11 days ago by neutrinoscientist0 • updated 11 days ago by h.mon15k
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Comment: A: How to convert tree in phylip format into newick format
... File "/home/x/.local/lib/python2.7/site-packages/Bio/AlignIO/__init__.py", line 234, in write raise ValueError("Unknown format '%s'" % format) ValueError: Unknown format 'newick' any help? ...
written 11 days ago by neutrinoscientist0 • updated 10 days ago by genomax48k

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