User: neutrinoscientist

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Posts by neutrinoscientist

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Comment: C: Phylogeny tree from a set of taxa
... its, a phylogeny tree (species and their classification: kingdom, phylum, class, order ....) ...
written 11 weeks ago by neutrinoscientist0
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Comment: C: Phylogeny tree from a set of taxa
... excuse me what you mean by relevant sequences? ...
written 12 weeks ago by neutrinoscientist0
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Phylogeny tree from a set of taxa
... I have set of taxa and I want to generate dynamically a phylogeney tree file based on a reference database. EX. the users will choose the set of taxa that they're interested in, from ~1000 taxa and the I should create the corresponding phylogeney tree. are there any R packages to create a tree fro ...
taxa species phylogenetic tree newick taxonomy written 12 weeks ago by neutrinoscientist0 • updated 12 weeks ago by Jean-Karim Heriche16k
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Phylogeny Tree based on SILVA classification
... Hello, have a list of species (taxa) and i want to generate a phylogeny tree using SILVA. How to do this? any help please. Thanks. ...
taxonomy written 12 weeks ago by neutrinoscientist0 • updated 12 weeks ago by Chirag Parsania930
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Comment: C: How to convert tree in phylip format into newick format
... I have a tree in phylip format and i want to convert it to newick format ...
written 3 months ago by neutrinoscientist0
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Comment: C: How to convert tree in phylip format into newick format
... not working Traceback (most recent call last): File "convert_trees.py", line 9, in Phylo.convert(infile,intype, outfile, outtype) File "/home/maria/.local/lib/python2.7/site-packages/Bio/Phylo/_io.py", line 90, in convert return write(trees, out_file, out_format, **kwargs) File "/hom ...
written 3 months ago by neutrinoscientist0
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Comment: C: How to convert tree in phylip format into newick format
... python convert_trees.py phyliptree.phy phylip mytree.nwk newick ...
written 3 months ago by neutrinoscientist0 • updated 3 months ago by h.mon18k
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Comment: C: How to convert tree in phylip format into newick format
... am so sorry for adding this as an answer. sorry its just in mistake. its still give error. Traceback (most recent call last): File "convert_trees.py", line 9, in Phylo.convert(infile,intype, outfile, outtype) File "/home/x/.local/lib/python2.7/site-packages/Bio/Phylo/_io.p ...
written 3 months ago by neutrinoscientist0 • updated 3 months ago by h.mon18k
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Comment: A: How to convert tree in phylip format into newick format
... File "/home/x/.local/lib/python2.7/site-packages/Bio/AlignIO/__init__.py", line 234, in write raise ValueError("Unknown format '%s'" % format) ValueError: Unknown format 'newick' any help? ...
written 3 months ago by neutrinoscientist0 • updated 3 months ago by genomax54k

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