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4
votes
6
replies
1.6k
views
Sciclone took too long
sciclone
updated 16 months ago by 127k • written 4.8 years ago by ▴ 90
0
votes
1
reply
1.2k
views
BAF without normal control, to do or not! or how
cnvkit BAF no controls TheTA2 TheTA
updated 3.5 years ago by • 0 • written 3.7 years ago by ▴ 90
2
votes
1
reply
1.9k
views
Why there is a 50% variant allele frequency in TCGA NSCLC data?
TCGA VAF Variant alle frequency somatic snv
3.7 years ago by sm.hashemin ▴ 90
1
vote
0
replies
1.9k
views
Answer: A: Why there is a 50% variant allele frequency in TCGA NSCLC data?
3.7 years ago by sm.hashemin ▴ 90
4
votes
4
replies
1.9k
views
cnvkit bgzf_read error 4 after 4 bytes
cnvkit bzip samtools
updated 3.7 years ago by ★ 2.8k • written 3.7 years ago by ▴ 90
0
votes
0
replies
1.9k
views
Comment: C: cnvkit bgzf_read error 4 after 4 bytes
3.7 years ago by sm.hashemin ▴ 90
1
vote
2
replies
1.1k
views
Does sciClone work on mouse exome data?
sciclone clonevol
updated 3.8 years ago by 20 • written 4.7 years ago by ▴ 90
0
votes
0
replies
1.9k
views
Comment: C: How to create a covariate file for MutSigCV using gene expression values from ot
4.1 years ago by sm.hashemin ▴ 90
0
votes
1
reply
3.6k
views
Comment: C: Visualizing CNV data based from bed or bedgraph format
4.1 years ago by sm.hashemin ▴ 90
4
votes
6
replies
3.6k
views
Visualizing CNV data based from bed or bedgraph format
CNV IGV R bed bedgraph
4.1 years ago by sm.hashemin ▴ 90
0
votes
0
replies
3.6k
views
Answer: A: Visualizing CNV data based from bed or bedgraph format
4.1 years ago by sm.hashemin ▴ 90
1
vote
0
replies
969
views
Comment: C: regions with very different VAF fall into one cluster
4.2 years ago by sm.hashemin ▴ 90
0
votes
0
replies
6.6k
views
Comment: C: plot a bedgraph
4.2 years ago by sm.hashemin ▴ 90
4
votes
4
replies
969
views
regions with very different VAF fall into one cluster
sciclone
updated 4.2 years ago by 22k • written 4.4 years ago by ▴ 90
1
vote
0
replies
969
views
Comment: A: regions with very different VAF fall into one cluster
4.2 years ago by sm.hashemin ▴ 90
0
votes
0
replies
6.6k
views
Comment: Comment: Tumor clonality algorithms
updated 3 months ago by 38k • written 4.5 years ago by ▴ 90
0
votes
0
replies
10k
views
Comment: C: How to add custom fields to the VCF files?
4.5 years ago by sm.hashemin ▴ 90
0
votes
1
reply
10k
views
Answer: A: How to add custom fields to the VCF files?
4.5 years ago by sm.hashemin ▴ 90
0
votes
1
reply
822
views
What is a good way to compare the WES and panel seq results from the same set of samples?
exome sequencing VCF Panel-seq
updated 4.6 years ago by ★ 2.1k • written 4.6 years ago by ▴ 90
0
votes
0
replies
214k
views
Comment: C: Tools To Calculate Average Coverage For A Bam File?
4.6 years ago by sm.hashemin ▴ 90
0
votes
1
reply
2.8k
views
Comment: C: How to add sample name to the VCF files
4.6 years ago by sm.hashemin ▴ 90
0
votes
1
reply
2.8k
views
Comment: C: How to add sample name to the VCF files
4.6 years ago by sm.hashemin ▴ 90
0
votes
5
replies
2.8k
views
How to add sample name to the VCF files
PLINK VCF BCFtools VCFtools lofreq
4.6 years ago by sm.hashemin ▴ 90
0
votes
0
replies
1.1k
views
Comment: C: Does sciClone work on mouse exome data?
4.7 years ago by sm.hashemin ▴ 90
0
votes
2
replies
1.6k
views
Comment: A: Sciclone took too long
4.8 years ago by sm.hashemin ▴ 90
0
votes
0
replies
2.3k
views
Comment: C: Bcftools view. FREQ inclusion error.
4.8 years ago by sm.hashemin ▴ 90
2
votes
2
replies
2.8k
views
Sciclone clonevol integration
sciclone clonevol
updated 4.8 years ago by 22k • written 4.8 years ago by ▴ 90
2
votes
2
replies
989
views
Can sciclone handle multiallelic variants?
sciclone multiallelic_variants
updated 4.8 years ago by 22k • written 4.8 years ago by ▴ 90
3
votes
1
reply
2.3k
views
Answer: A: Bcftools view. FREQ inclusion error.
updated 4.8 years ago by 84k • written 4.9 years ago by ▴ 90
0
votes
0
replies
2.3k
views
Comment: C: Bcftools view. FREQ inclusion error.
updated 4.8 years ago by 84k • written 4.8 years ago by ▴ 90
0
votes
0
replies
4.5k
views
Comment: C: How to convert bam-readcount output to BED-VAF format
4.8 years ago by sm.hashemin ▴ 90
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