User: samanthabird

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Posts by samanthabird

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Comment: C: QIIME filter_fasta.py not removing chimeric sequences
... Thank you both for your answers! I wasn't actually running through the QIIME pipeline, I had used vsearch to remove chimeras and this was the way it had outputted the text file. However, removing the chevron worked perfectly - even with the sequences still in the file! I appreciate the help! ...
written 18 months ago by samanthabird0
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QIIME filter_fasta.py not removing chimeric sequences
... Hey everyone, I am working with 16S data and I have removed my chimeric sequences using vsearch. This program outputted a .txt file with all suspect sequences. I am trying to remove these sequences from my original fasta file using qiime filter_fasta.py command. This is what I have tried: filter_f ...
python 16s rrna qiime chimera written 19 months ago by samanthabird0 • updated 19 months ago by toralmanvar820

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