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6
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4
replies
2.4k
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Batch effect correction: Input data format for removeBatchEffect from limma package
R effects limma batch removeBatchEffect
updated 3.8 years ago by ★ 8.5k • written 3.8 years ago by ▴ 270
0
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0
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12k
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Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
3.8 years ago by mohammedtoufiq91 ▴ 270
0
votes
1
reply
12k
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Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
3.8 years ago by mohammedtoufiq91 ▴ 270
2
votes
4
replies
12k
views
Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or missing values in 'x')
missMDA R PCAtools PCA
updated 2.4 years ago by 45k • written 3.8 years ago by ▴ 270
0
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0
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57k
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Comment: Comment: Batch effects : ComBat or removebatcheffects (limma package) ?
3.8 years ago by mohammedtoufiq91 ▴ 270
0
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0
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1.1k
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Comment: Comment: Combining Microarray and RNA-Seq datasets visualization and comparison
updated 3.9 years ago by 89k • written 3.9 years ago by ▴ 270
0
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1
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1.1k
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Combining Microarray and RNA-Seq datasets visualization and comparison
ComBat microarray sva RNAseq expression gene
updated 3.9 years ago by 89k • written 3.9 years ago by ▴ 270
2
votes
2
replies
4.7k
views
Exporting normalized counts data from DeSeq2
DESeq2 normalization expression RNA-seq
updated 3.2 years ago by 45k • written 4.1 years ago by ▴ 270
0
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0
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4.7k
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Comment: Comment: Exporting normalized counts data from DeSeq2
4.1 years ago by mohammedtoufiq91 ▴ 270
0
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0
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1.8k
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Comment: Comment: Combining RNA-Seq read counts from 2 lanes of the same sample (.txt file)
4.1 years ago by mohammedtoufiq91 ▴ 270
1
vote
2
replies
1.8k
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Combining RNA-Seq read counts from 2 lanes of the same sample (.txt file)
expression featurecounts counts rna-seq gene
4.1 years ago by mohammedtoufiq91 ▴ 270
0
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0
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7.2k
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Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
4.2 years ago by mohammedtoufiq91 ▴ 270
0
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0
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2.4k
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Comment: Comment: Calculate fold change in edgeR with one sample per condition
4.2 years ago by mohammedtoufiq91 ▴ 270
4
votes
5
replies
2.4k
views
Calculate fold change in edgeR with one sample per condition
R edgeR expression rna-seq differential
4.2 years ago by mohammedtoufiq91 ▴ 270
8
votes
6
replies
7.2k
views
How to convert log2 scale RNA-Seq expression data to linear scale data
expression edgeR R rna-seq fold-change
updated 4.2 years ago by 13k • written 4.2 years ago by ▴ 270
0
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2
replies
7.2k
views
Comment: Comment: How to convert log2 scale RNA-Seq expression data to linear scale data
4.2 years ago by mohammedtoufiq91 ▴ 270
9
votes
7
replies
4.4k
views
Averaging duplicates of a gene in RNA-Seq dataset
expression differential average R rna-seq
updated 4.3 years ago by ▴ 60 • written 4.3 years ago by ▴ 270
0
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0
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4.4k
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Comment: Comment: Averaging duplicates of a gene in RNA-Seq dataset
4.3 years ago by mohammedtoufiq91 ▴ 270
0
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1
reply
4.4k
views
Comment: Comment: Averaging duplicates of a gene in RNA-Seq dataset
4.3 years ago by mohammedtoufiq91 ▴ 270
0
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0
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1.7k
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Comment: Comment: How to create gene level data from a probe level data?
4.3 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
1.7k
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Comment: Comment: How to create gene level data from a probe level data?
4.3 years ago by mohammedtoufiq91 ▴ 270
2
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4
replies
1.7k
views
How to create gene level data from a probe level data?
R sum mean gene microarray
4.3 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
1.1k
views
Comment: Comment: How to calculate the difference between the RNA-Seq individual samples?
4.4 years ago by mohammedtoufiq91 ▴ 270
1
vote
2
replies
1.1k
views
How to calculate the difference between the RNA-Seq individual samples?
comparison expression edgeR replicates R
4.4 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
48k
views
Comment: Comment: LogFC and LogCPM
4.4 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
2.4k
views
Comment: Comment: Calculate fold change in edgeR with one sample per condition
4.4 years ago by mohammedtoufiq91 ▴ 270
1
vote
1
reply
751
views
Flooring (adjusting) values in Gene Expression Microarray data analysis?
gene-expression microarray R
updated 4.4 years ago by 89k • written 4.4 years ago by ▴ 270
0
votes
1
reply
4.3k
views
How to increase the size of the top annotation bars in Complexheatmap
plot annotation ComplexHeatmap heatmap
4.5 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
4.3k
views
Answer: Answer: How to increase the size of the top annotation bars in Complexheatmap
4.5 years ago by mohammedtoufiq91 ▴ 270
0
votes
1
reply
2.0k
views
Comment: Comment: How to sort multi columns on long dataframe in R
4.6 years ago by mohammedtoufiq91 ▴ 270
0
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1
reply
2.0k
views
Comment: Comment: How to sort multi columns on long dataframe in R
4.6 years ago by mohammedtoufiq91 ▴ 270
1
vote
5
replies
2.0k
views
How to sort multi columns on long dataframe in R
data.frame Order R dplyr plyr
updated 4.5 years ago by ▴ 220 • written 4.6 years ago by ▴ 270
4
votes
4
replies
3.1k
views
Customize fold change legend values in ComplexHeatmap
ComplexHeatmap circlize colorRamp2 R matrix
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 270
0
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0
replies
3.1k
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Comment: C: Customize fold change legend values in ComplexHeatmap
5.0 years ago by mohammedtoufiq91 ▴ 270
0
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1
reply
3.1k
views
Comment: C: Customize fold change legend values in ComplexHeatmap
5.0 years ago by mohammedtoufiq91 ▴ 270
0
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0
replies
6.5k
views
Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
5.2 years ago by mohammedtoufiq91 ▴ 270
0
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1
reply
6.5k
views
Comment: C: How to visualize Boxplot with using fold change values in ggplot2 in R
5.2 years ago by mohammedtoufiq91 ▴ 270
6
votes
5
replies
6.5k
views
How to visualize Boxplot with using fold change values in ggplot2 in R
Boxplot ggplot2 R fold change
updated 5.2 years ago by 13k • written 5.2 years ago by ▴ 270
0
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0
replies
3.7k
views
Comment: C: Batch effect identification using PCA
5.4 years ago by mohammedtoufiq91 ▴ 270
1
vote
5
replies
3.7k
views
Batch effect identification using PCA
PCA qRT-PCR R targeted-assay Batch-Effect
updated 18 months ago by 45k • written 5.4 years ago by ▴ 270
0
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1
reply
3.7k
views
Comment: C: Batch effect identification using PCA
5.4 years ago by mohammedtoufiq91 ▴ 270
0
votes
1
reply
2.2k
views
Comment: C: PCA plot on genes and color by batch and plate information
5.4 years ago by mohammedtoufiq91 ▴ 270
0
votes
0
replies
2.2k
views
Comment: C: PCA plot on genes and color by batch and plate information
5.4 years ago by mohammedtoufiq91 ▴ 270
1
vote
5
replies
2.2k
views
PCA plot on genes and color by batch and plate information
pca factoextra ggfortify ggplot2 reshape2
5.4 years ago by mohammedtoufiq91 ▴ 270
0
votes
0
replies
2.6k
views
Comment: C: Unable to locate libraries in latest version of R 4.0.0
5.4 years ago by mohammedtoufiq91 ▴ 270
3
votes
5
replies
2.6k
views
Unable to locate libraries in latest version of R 4.0.0
R library missing r studio installation
updated 5.4 years ago by 20 • written 5.4 years ago by ▴ 270
0
votes
0
replies
2.6k
views
Comment: C: Unable to locate libraries in latest version of R 4.0.0
5.4 years ago by mohammedtoufiq91 ▴ 270
0
votes
1
reply
3.7k
views
Comment: C: Error while using ComplexHeatmap
5.4 years ago by mohammedtoufiq91 ▴ 270
0
votes
1
reply
3.7k
views
Comment: C: Error while using ComplexHeatmap
5.4 years ago by mohammedtoufiq91 ▴ 270
2
votes
5
replies
3.7k
views
Error while using ComplexHeatmap
R data.frame ComplexHeatmap heatmap clustering
5.4 years ago by mohammedtoufiq91 ▴ 270
193 results • Page 2 of 4
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