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Comment: Comment: JoinLayers to find markers in merged or integrated analysis in seurat
7 months ago by mohammedtoufiq91 ▴ 260
2
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2
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4.2k
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JoinLayers to find markers in merged or integrated analysis in seurat
scRNA-seq seurat FindMarkers
7 months ago by mohammedtoufiq91 ▴ 260
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
8 months ago by mohammedtoufiq91 ▴ 260
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1.7k
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Comment: Comment: How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objec
8 months ago by mohammedtoufiq91 ▴ 260
2
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4
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1.7k
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How to remove the analysis slots added to my scRNA-Seq and scATAC-Seq data objects in R?
scrna-seq seurat signac
8 months ago by mohammedtoufiq91 ▴ 260
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Comment: Comment: Illumina HumanHT-12 V3.0 expression beadchip reading data
17 months ago by mohammedtoufiq91 ▴ 260
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1.5k
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Comment: Comment: How to retrieve Microarray probe annotations
18 months ago by mohammedtoufiq91 ▴ 260
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2
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1.5k
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How to retrieve Microarray probe annotations
org.Hs.eg.db annotables AnnotationDbi Microarray R
18 months ago by mohammedtoufiq91 ▴ 260
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4
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Issues marking genes in ComplexHeatmap
pheatmap complexheatmap heatmap ggplot2 R
updated 10 weeks ago by • 0 • written 18 months ago by ▴ 260
3
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Answer: Answer: Issues marking genes in ComplexHeatmap
18 months ago by mohammedtoufiq91 ▴ 260
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2.3k
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Comment: Comment: Issues marking genes in ComplexHeatmap
18 months ago by mohammedtoufiq91 ▴ 260
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1.6k
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Comment: Comment: Question about RNA-Seq data alignment
19 months ago by mohammedtoufiq91 ▴ 260
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1.6k
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Comment: Comment: Question about RNA-Seq data alignment
19 months ago by mohammedtoufiq91 ▴ 260
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9
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1.6k
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Question about RNA-Seq data alignment
STAR Alignment BBMAP RNA-Seq Bowtie
19 months ago by mohammedtoufiq91 ▴ 260
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0
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1.6k
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Comment: Comment: Question about RNA-Seq data alignment
19 months ago by mohammedtoufiq91 ▴ 260
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1
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1.6k
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Comment: Comment: Question about RNA-Seq data alignment
19 months ago by mohammedtoufiq91 ▴ 260
1
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1
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966
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Comment: Comment: How to map and annotate gene symbols to gene type?
19 months ago by mohammedtoufiq91 ▴ 260
5
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3
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966
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How to map and annotate gene symbols to gene type?
Ensembl RefSeq UCSC biomart RNA-Seq
updated 19 months ago by 145k • written 19 months ago by ▴ 260
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
20 months ago by mohammedtoufiq91 ▴ 260
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1
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1.5k
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Comment: Comment: Unable to run RSEM because of error rsem-parse-alignments : No such file or dire
20 months ago by mohammedtoufiq91 ▴ 260
2
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4
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1.5k
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Unable to run RSEM because of error rsem-parse-alignments : No such file or directory
RNA-Seq Bowtie2 RSEM Boost
20 months ago by mohammedtoufiq91 ▴ 260
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0
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562
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How to identify mitochondrial contamination in RNAseq and QC data?
QC FastQC MultiQC alignment rna-seq
21 months ago by mohammedtoufiq91 ▴ 260
0
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0
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1.9k
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
21 months ago by mohammedtoufiq91 ▴ 260
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1
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1.9k
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Comment: Comment: Possibility of marking genes of interest by in ComplexHeatmap
21 months ago by mohammedtoufiq91 ▴ 260
5
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4
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1.9k
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Possibility of marking genes of interest by in ComplexHeatmap
heatmap ggplot2 R complexheatmap
21 months ago by mohammedtoufiq91 ▴ 260
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1.6k
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Comment: Comment: Plot heatmap by average based on sample groups
21 months ago by mohammedtoufiq91 ▴ 260
2
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2
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1.6k
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Plot heatmap by average based on sample groups
pheatmap complexheatmap heatmap ggplot2 R
21 months ago by mohammedtoufiq91 ▴ 260
1
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0
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394
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How to find miRNAs targeting genes using a list in R?
PicTar miRBase miRNA PITA R
21 months ago by mohammedtoufiq91 ▴ 260
1
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1
reply
898
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Representation of variables in PCA
ggplot2 biplot R pcatools pca
updated 24 months ago by ▴ 520 • written 24 months ago by ▴ 260
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Comment: Comment: How to adjust font size of row_split labels in ComplexHeatmap R package
2.3 years ago by mohammedtoufiq91 ▴ 260
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2
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3.6k
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How to adjust font size of row_split labels in ComplexHeatmap R package
Heatmap ComplexHeatmap R labels
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 260
1
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3
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1.8k
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Help with plotting heatmap with both row and column label annotations
pheatmap ComplexHeatmap R Heatmap annotations
updated 2.3 years ago by ★ 1.8k • written 2.3 years ago by ▴ 260
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1.8k
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Comment: Comment: Help with plotting heatmap with both row and column label annotations
2.3 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.5k
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
2.3 years ago by mohammedtoufiq91 ▴ 260
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1
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1.5k
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Comment: Comment: Extraction of high variance or contributing genes using pcatools
2.3 years ago by mohammedtoufiq91 ▴ 260
5
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5
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1.5k
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Extraction of high variance or contributing genes using pcatools
PCAtools FactoMineR R prcomp PCA
2.3 years ago by mohammedtoufiq91 ▴ 260
0
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1
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856
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Comment: Comment: How to label genes passing the p-value and fold change cut-offs in EnhancedVolca
2.4 years ago by mohammedtoufiq91 ▴ 260
4
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3
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856
views
How to label genes passing the p-value and fold change cut-offs in EnhancedVolcano?
EnhancedVolcano volcano label R genes
updated 2.4 years ago by 145k • written 2.4 years ago by ▴ 260
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1.2k
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.4 years ago by mohammedtoufiq91 ▴ 260
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0
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1.2k
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Comment: Comment: Unable to open pdf file of volcano plots created using many group comparisons fr
2.4 years ago by mohammedtoufiq91 ▴ 260
5
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4
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1.2k
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Unable to open pdf file of volcano plots created using many group comparisons from EnhancedVolcano package in R
tidyverse forloops EnhancedVolcano volcano R
2.4 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.6k
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Comment: Comment: Error in ComplexHeatmap while adding barplot as column annotations
2.4 years ago by mohammedtoufiq91 ▴ 260
2
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2
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1.6k
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Error in ComplexHeatmap while adding barplot as column annotations
ComplexHeatmap heatmap barplot R annotation
2.4 years ago by mohammedtoufiq91 ▴ 260
0
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0
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4.7k
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Comment: Comment: How to add color scheme for many groups in PCA using R?
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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1
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4.7k
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Comment: Comment: How to add color scheme for many groups in PCA using R?
2.7 years ago by mohammedtoufiq91 ▴ 260
6
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4
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4.7k
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How to add color scheme for many groups in PCA using R?
R biplot PCA PCAtools ggplot2
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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0
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1.6k
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Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.7 years ago by mohammedtoufiq91 ▴ 260
0
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1
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1.6k
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Comment: Comment: Batch effect correction: Input data format for removeBatchEffect from limma pack
2.7 years ago by mohammedtoufiq91 ▴ 260
6
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4
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1.6k
views
Batch effect correction: Input data format for removeBatchEffect from limma package
R effects limma batch removeBatchEffect
updated 2.7 years ago by ★ 7.3k • written 2.7 years ago by ▴ 260
0
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0
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8.7k
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Comment: Comment: Error while running PCAtools (Error in svd(x, nu = nu, nv = nv) : infinite or mi
2.7 years ago by mohammedtoufiq91 ▴ 260
191 results • Page 1 of 4
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