User: mohammedtoufiq91

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Posts by mohammedtoufiq91

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Comment: C: Merging two files based on the identifier column (gene symbols)
... Thank you so much. @Benn ...
written 8 days ago by mohammedtoufiq9150
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Merging two files based on the identifier column (gene symbols)
... Hi, I have two different *.csv files with different column headers except one column, i.e, one with the gene symbols and expression data (samples), and the other with the gene symbols and phenotypic data/attributes, in both the files, one column (gene symbols) is same. I would like to merge both th ...
files R merge gene annotation packages written 8 days ago by mohammedtoufiq9150 • updated 8 days ago by Jean-Karim Heriche20k
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Comment: C: Are there any functions to subtract all features(rows) to a particular value(row
... Thank you. Just one more question, In case, I would like to print only specific columns as shown in the attached example data file from the O.Value1 to O.Value13 columns without the populating other columns, how can I deal with it? And later, print separately (-1) *O.Values as a different list. Doe ...
written 28 days ago by mohammedtoufiq9150
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Comment: C: Are there any functions to subtract all features(rows) to a particular value(row
... [example data][1] [1]: https://www.dropbox.com/s/zy75gbmk8ir3fwo/template_example.xlsx?dl=0 example data attached in the link. Where, O.Value1 = Value1 of [gene_1, gene_2, gene_3, gene_4, gene_5] - [Value1 of Normalizer] Negative.O.Value1 = (-1) *O.Value1 till O.Value13 Negative.O.Valu ...
written 28 days ago by mohammedtoufiq9150
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Comment: C: Are there any functions to subtract all features(rows) to a particular value(row
... Thank you Tokhir. This was helpful and worked fine. But if I have hundreds of values/sample columns in the data file, for instance as given below: |Feature| |Value| |Value2| |Value3| |Value4| |Value5| |Value...n| How could this be modified? For this purpose, can I change the function to df1$ ...
written 28 days ago by mohammedtoufiq9150
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Are there any functions to subtract all features(rows) to a particular value(row) in the same data file?
... I am new to programming in R and Python, however have some basics. I have a technical question about computation. I would like to know if there are any functions for performing subtraction of all features(rows) to a particular value (row) from the same data list. I would like to obtain the output_va ...
R python normalization matrix written 28 days ago by mohammedtoufiq9150 • updated 28 days ago by zx87548.2k
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Support for import of custom matrix data in the ddCt R package
... Hi, I would like to know if I can import the data into the ddCt package in the matrix format for the analysing the qRTPCR data. If possible, how could this be done? I have a .txt file with 260 genes (rows) and 27 samples (columns). Best Regards, Toufiq ...
R analysis ddct import qrtpcr written 29 days ago by mohammedtoufiq9150
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Sample grouping (phenoData) and visualization in R package- HtqPCR
... Hi, I created a qPCRset using HTqPCR package for analysing the RTPCR data from BioMark Fluidigm setup. I am facing issues while grouping the samples for the data visualization and analysis. would like to group the samples based on the "Type" parameter such as 1, 4, and 6. However, getting an error ...
R htqpcr visualization phenodata grouping written 4 weeks ago by mohammedtoufiq9150
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Data integration of transcriptomics and Metagenomics data
... Hi, I am interested to integrate Metagenomics and transcriptomics (qRT-PCR) data. I would like to know if there are any tools to perform the integrated analysis using Metagenomics and transcriptomics results or any resources would be helpful. Best Regards, Toufiq ...
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qRT-PCR data analysis queries
... Hi, I have a question on qRT-PCR data analysis. The gene panel has more than 200 genes along with the multiple reference/housekeeping genes. I have 50 paired samples (i.e Before vs After Vitamin supplementation) and 6 pooled controls (3 Pooled controls in one plate and 3 in another plate as interpl ...
normalization analysis qrt-pcr statistics written 3 months ago by mohammedtoufiq9150

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Popular Question 8 days ago, created a question with more than 1,000 views. For Identify adapter sequences for trimming from Illumina paired end fastq files
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