User: MatthewP

gravatar for MatthewP
MatthewP680
Reputation:
680
Status:
Trusted
Location:
China
Last seen:
9 hours ago
Joined:
2 years, 2 months ago
Email:
m***********@gmail.com

Posts by MatthewP

<prev • 175 results • page 1 of 18 • next >
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Comment: C: Uneven number of technical replicates for biological replicates in RNA-seq
... I think maybe concatenate technical replicates and take this action as one batch group? For example with replicates is 1 without replicate is 0. ...
written 10 days ago by MatthewP680
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Answer: A: From Fastq to vcf
... Hello, this [post](https://gatk.broadinstitute.org/hc/en-us/articles/360037499012-I-am-unable-to-use-VQSR-recalibration-to-filter-variants) from GATK suggest hard-filtering. ...
written 13 days ago by MatthewP680
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Answer: A: how Creat un-aligne file with bowtie?
... Hello, you can type `bowtie2 --help` then you probably will see some parameters like --un write unpaired reads that didn't align to --al write unpaired reads that aligned at least once to --un-conc write pairs that didn't align concordantly to --al-conc ...
written 13 days ago by MatthewP680
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Comment: C: Hope Biostars can keep text even you click Cancel button
... Yes this is good habit I should follow. ...
written 19 days ago by MatthewP680
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Forum: (Closed) Hope Biostars can keep text even you click Cancel button
... Sometimes you type a lot then click `Cancel` and lost all text, I hope Biostars can restore those text when you click `Comment` again. ...
forum improvement written 19 days ago by MatthewP680
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Comment: C: Help improve search paper skill.
... Multiple omics(WGS, WGBS, RNA-seq...) data will be released. I didn't decide what kind of analysis yet because it's very early stage, I am reading papers(biology and bioinformatics) try to work out some plans currently. ...
written 19 days ago by MatthewP680
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Help improve search paper skill.
... Hello, I have omics data for a few patients(assume < 20 cases). I would like to learn how others analysis omics data of cancer patient, but I can't find some paper use such few samples(Maybe because the heterogeneity of clinical sample requires large sample scale). How do I search paper do omi ...
pubmed written 20 days ago by MatthewP680 • updated 20 days ago by The160
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Comment: C: Remove reads where quality score length does not equal sequence length
... Can you post one of such record? This sounds strange. ...
written 24 days ago by MatthewP680
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Answer: A: Does anyone have experience of methylation alignment tool "Bismark"?
... Hey, go see Bismark [Docs](https://github.com/FelixKrueger/Bismark/tree/master/Docs) you will see this field is `QUAL` which means sequencing quality, so this should the same with quality value in fastq file. ...
written 26 days ago by MatthewP680
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Answer: A: How to download matrix of the "GSE73554"
... # continute your code # Expression matrix exprData <- exprs(gset) # phenotype data phenoData <- pData(gset) ...
written 28 days ago by MatthewP680

Latest awards to MatthewP

Popular Question 21 days ago, created a question with more than 1,000 views. For Some questions about call variants for mtDNA using GATK HaplotypeCaller
Scholar 29 days ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Problem with downloading GSE file by GEOquery
Popular Question 8 weeks ago, created a question with more than 1,000 views. For How to process (seems) Agilent microarrry data?
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Problem with downloading GSE file by GEOquery
Scholar 3 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Teacher 3 months ago, created an answer with at least 3 up-votes. For A: Problem with downloading GSE file by GEOquery
Popular Question 3 months ago, created a question with more than 1,000 views. For Some questions about call variants for mtDNA using GATK HaplotypeCaller
Popular Question 4 months ago, created a question with more than 1,000 views. For How to use snpSift annotate -info option to annotate specific fields of INFO
Popular Question 4 months ago, created a question with more than 1,000 views. For How to use snpSift annotate -info option to annotate specific fields of INFO
Popular Question 6 months ago, created a question with more than 1,000 views. For Some questions about write human mitochondrial variants into VCF file
Scholar 7 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Scholar 7 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Scholar 8 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Centurion 9 months ago, created 100 posts.
Scholar 11 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Appreciated 12 months ago, created a post with more than 5 votes. For A: Problem with downloading GSE file by GEOquery
Scholar 12 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Problem with downloading GSE file by GEOquery
Scholar 18 months ago, created an answer that has been accepted. For A: How to convert data from NCBI E-utilities.efetch to python data object?
Supporter 18 months ago, voted at least 25 times.

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