Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : questions
4
votes
6
replies
1.1k
views
Pre-processing for single cell RNAseq: Hard thresholds, data (cluster)-driven or both?
scRNA-seq
updated 6 months ago by ▴ 120 • written 7 months ago by ▴ 130
2
votes
2
replies
1.0k
views
Seurat: Log fold change and p value when control expression is 0
RNA-seq DGE
updated 10 months ago by 4.2k • written 10 months ago by ▴ 130
4
votes
4
replies
911
views
Choice for statistical test (and R package)
RNA-seq DGE
10 months ago by psm ▴ 130
3
votes
4
replies
1.8k
views
How much RAM for scRNAseq 200K cells?
cells Single RNA-seq cell
updated 17 months ago by 3.9k • written 17 months ago by ▴ 130
0
votes
1
reply
500
views
Close correlation between differentially-expressed genes
rna-seq
updated 18 months ago by ▴ 150 • written 18 months ago by ▴ 130
8
votes
19
replies
2.6k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics rnaseq correlation
2.2 years ago by psm ▴ 130
1
vote
0
replies
513
views
Differential gene expression analysis on microarray dataset with files from two chips
differential expression microarray
2.4 years ago by psm ▴ 130
3
votes
4
replies
2.3k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 3.2 years ago by 82k • written 3.2 years ago by ▴ 130
5
votes
2
replies
3.0k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 3.2 years ago by 82k • written 3.2 years ago by ▴ 130
0
votes
2
replies
462
views
Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
3.3 years ago by psm ▴ 130
1
vote
2
replies
3.6k
views
Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 3.7 years ago by 5.3k • written 3.7 years ago by ▴ 130
2
votes
6
replies
2.3k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 2.8 years ago by • 0 • written 3.8 years ago by ▴ 130
4
votes
2
replies
2.3k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 130
1
vote
5
replies
2.6k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA R RNA-Seq
updated 2.9 years ago by 13k • written 3.8 years ago by ▴ 130
13
votes
8
replies
4.8k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq ensembl annotation
updated 5.6 years ago by ★ 2.4k • written 5.6 years ago by ▴ 130
3
votes
0
replies
2.6k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq alignment
5.6 years ago by psm ▴ 130
6
votes
9
replies
5.7k
views
RNA-seq: How to know which paired reads come from the same original fragment?
RNA-Seq Assembly
updated 2.8 years ago by • 0 • written 5.9 years ago by ▴ 130
17 results • Page 1 of 1
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6