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questions
2
votes
4
replies
728
views
How much RAM for scRNAseq 200K cells?
cells
Single
RNA-seq
cell
updated 6 months ago by
benformatics
3.6k • written 7 months ago by
psm
▴ 100
0
votes
1
reply
322
views
Close correlation between differentially-expressed genes
rna-seq
updated 7 months ago by
bompipi95
▴ 120 • written 7 months ago by
psm
▴ 100
8
votes
19
replies
1.8k
views
Multiple correlations RNAseq data - correction for multiple testing?
statistics
rnaseq
correlation
15 months ago by
psm
▴ 100
1
vote
0
replies
364
views
Differential gene expression analysis on microarray dataset with files from two chips
differential
expression
microarray
18 months ago by
psm
▴ 100
3
votes
4
replies
1.5k
views
Pre-processing RNAseq data before PCA or tSNE: Log-transform data?
RNA-Seq
updated 2.3 years ago by
ATpoint
72k • written 2.3 years ago by
psm
▴ 100
4
votes
2
replies
1.8k
views
DGE analysis with more than 2+ groups: Compare to reference or compare to all other groups?
RNA-Seq
updated 2.3 years ago by
ATpoint
72k • written 2.3 years ago by
psm
▴ 100
0
votes
2
replies
331
views
Software/Package to automatically annotate genes? Do any exist?
RNA-Seq
2.4 years ago by
psm
▴ 100
1
vote
2
replies
2.8k
views
Seurat Violin Plot shows counts LESS than 0?
RNA-Seq
updated 2.8 years ago by
Bastien Hervé
5.3k • written 2.8 years ago by
psm
▴ 100
2
votes
6
replies
1.8k
views
Importing zUMI output of single nuclear RNA-seq data to Seurat: Introns, exons, or both?
RNA-Seq
updated 23 months ago by
pdbio
• 0 • written 2.9 years ago by
psm
▴ 100
3
votes
2
replies
1.7k
views
GSVA kernels: Gaussian or Poisson?
RNA-Seq
updated 2.9 years ago by
Kevin Blighe
85k • written 2.9 years ago by
psm
▴ 100
1
vote
5
replies
2.0k
views
Is the ssGSEA enrichment score affected by other samples in the analysis group?
ssGSEA
R
RNA-Seq
updated 2.0 years ago by
igor
13k • written 2.9 years ago by
psm
▴ 100
13
votes
8
replies
3.9k
views
ENSEMBL annotation file for quantification: which file to use?
RNA-Seq
ensembl
annotation
updated 4.7 years ago by
Ben_Ensembl
★ 2.2k • written 4.7 years ago by
psm
▴ 100
2
votes
0
replies
2.4k
views
HISAT2: Extracting splice sites and exons for index
RNA-Seq
alignment
4.7 years ago by
psm
▴ 100
6
votes
9
replies
4.4k
views
RNA-seq: How to know which paired reads come from the same original fragment?
RNA-Seq
Assembly
updated 23 months ago by
wang-yanfang
• 0 • written 5.0 years ago by
psm
▴ 100
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