User: Daniel Fernández

Reputation:
40
Status:
New User
Location:
Lima, Perú
Last seen:
6 years ago
Joined:
7 years, 4 months ago
Email:
4***@biostars.org

Posts by Daniel Fernández

<prev • 24 results • page 1 of 3 • next >
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How To Find Members Of A Gene Family From The Reads Of An Unassembled Genome
... Hi, I have to find some members of gene's family, in a genome in SRA format, (http://www.ncbi.nlm.nih.gov/Traces/s...tudy=SRP014648). Well I convert this SRA to FastQ (fastq-dump) and then in FASTA, I decided not assembly because the genome is very hard, and maybe assembly sequences from 2 or more ...
genome sra assembly written 6.0 years ago by Daniel Fernández40 • updated 6.0 years ago by Istvan Albert ♦♦ 81k
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Comment: C: Tgicl Installation
... I post the error with thw rpm. Yes I only extract this, then I create a symlink in my PATH, then I copy the TGI directory from TGICL/lib to /usr/local/lib64/perl5/, and it show me the second error (about the DBDrv.pm). I don't know what else to do. ...
written 7.0 years ago by Daniel Fernández40
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Tgicl Installation
... Hi, some months ago I had problem with the TGICL program and I solved it but that was .deb package, now I use fedora, I tried with .rpm package but doesn't work, so now I try with the tar.gz file and I have the same problem that before with .deb, when I try to run tgicl it show me these. Can't loca ...
written 7.0 years ago by Daniel Fernández40 • updated 7.0 years ago by Ketil4.0k
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Comment: C: Program To Align Cdna And Dna Genomic
... I edit the original post, please see the image ...
written 7.1 years ago by Daniel Fernández40
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Program To Align Cdna And Dna Genomic
... Hi, I want to align cDNA and DNA genomic, but not one vs. one, I have 2 cDNA and 3 genomic sequences, and I would like to see the entire sequence, alignmemt and not alignment, for editing, like clustalx, I tried with clustalx but is not good to do that, I tried with other programs but always in one ...
cdna alignment dna written 7.1 years ago by Daniel Fernández40 • updated 7.1 years ago by Vitis2.2k
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Comment: C: Artemis Or Apollo
... Sorry, I'm not good in that, I tried with "fix_exhon -gf 2" and it show me the same error. ...
written 7.2 years ago by Daniel Fernández40
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Comment: C: Artemis Or Apollo
... Hi, thanks for the script, it show me a little error, see above ...
written 7.2 years ago by Daniel Fernández40
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Comment: C: Artemis Or Apollo
... Hi, I sent my gff2 by mail on Saturday, I hope you have received. ...
written 7.2 years ago by Daniel Fernández40
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Comment: C: Artemis Or Apollo
... thanks I will send you by mail my gff2. ...
written 7.2 years ago by Daniel Fernández40
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Comment: C: Artemis Or Apollo
... Now I was trying with augustus, but the result doesn't convince me, because the homology.out.gff is very similar to the abinitio.out.gff, mmm ... this biopython, how I can install the modules? because there said that is not yet integrated to biopython, so I guess I only need this modules. from BCBi ...
written 7.2 years ago by Daniel Fernández40

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