User: Daniel Fernández

Reputation:
40
Status:
New User
Location:
Lima, Perú
Last seen:
6 years, 1 month ago
Joined:
7 years, 4 months ago
Email:
4***@biostars.org

Posts by Daniel Fernández

<prev • 24 results • page 2 of 3 • next >
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Comment: C: Artemis Or Apollo
... yes, thanks, do I give you my output gff2? or how to ...
written 7.2 years ago by Daniel Fernández40
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Artemis Or Apollo
... Hi, I have some very simple questions, Is possible to load the Exonerate's output (GFF2) in Artemis ? ... I trying with some scripts and exe to convert but without success (processexonerategff3fast.pl; gffread) If the first question is not. Can Apollo load GFF2 and/or GFF3? ... I trying to inst ...
gff3 written 7.2 years ago by Daniel Fernández40 • updated 7.2 years ago by Zev.Kronenberg11k
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Comment: C: Annotation In Gff3
... No error message was produced, nothing, it's very rare. Before you test the gffread with exonerate. ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... Sorry, GFF2 to GFF3, I tried with gffread -E exonerate.gff2 -o out.gff3 but it doesn't work, the outgff3 size is 0 , I tried tha same but with the augustus.gff3, and work, what's the problem? ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... Sorry but what parameter I have to use to convert gff3 to gff2? I tried but without success ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... I run the "gffread" but it show me an error: No such file or directory at ./gffread.pl line 27. The line 27 is: open CONFIG, "/usr/users/ga002/corpasm/workarea/ricinus/conf/gffread.conf" or die $!; ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... I search in Cufflinks but I did not find the "gfftool", can you send me the link, please? ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... Well it is the libraries not the RepBase, http://www.girinst.org/server/RepBase/index.php, I downloaded both RepBase17.05.###.tar.gz, but I don't know how install it, it doesn't have a readme or install file. ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... I trying to install MAKER again, in RepeatMasker wich RepBase is the one I have to download?RepBase17.05.embl.tar.gz or RepBase17.05.fasta.tar.gz. ...
written 7.3 years ago by Daniel Fernández40
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Comment: C: Annotation In Gff3
... Well, 5months ago I tried to install it. I remember that I can't install the RMBlast, I copy the executables in my $PATH, I run it and ok, but the maker did not recognize it, and I am confused because RMBlast have several binaries with the same name that Blast, so in my path I had binaries with the ...
written 7.3 years ago by Daniel Fernández40

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