User: causland

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causland0
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Posts by causland

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Submit paired bacterial chromosome and plasmid scaffolds to NCBI?
... Hi all, First time submitting scaffold-level assemblies of a bacterial chromosome and plasmid (from same strain) to NCBI GenBank. I have been using the genome submission tool on NCBI (described [here][1]) for a WGS genome. I guess I really just want to confirm that: 1. I should use 'batch submiss ...
genome assembly sequence submission ncbi written 6 months ago by causland0
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HiSAT2 RNAseq alignment low + stranded data predicted to be unstranded
... Hi all, I have been receiving some confusing output with an RNA-seq dataset that I am trying to ultimately determine differential expression and fpkm values for. Background: Library prep was stranded TruSeq (dUTP method) of mouse metatranscriptome and was given assembled contigs of transcripto ...
rna-seq written 10 months ago by causland0
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Signal transduction protein database prokaryotes- MiST2 obsolete?
... Hi all, I am trying to find a database that identifies signal proteins in prokaryotes. It looks like MiST2/MiST by Ulrich and Zhulin has been decommissioned or is being overhauled (see http://next.mistdb.com), and I've been scouring the interwebs for something similar to not much avail. Wonderin ...
database signal transduction prokaryotes proteins written 21 months ago by causland0

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