User: souzademedeiros

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Posts by souzademedeiros

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Alignment scores thresholds with DNA
... Hi, When using DNA as input data for OMA, how do alignment scores compare to aminoacid alingments? I am wondering specifically if the default MinScore threshold applies equally well for this kind of data, or if one should consider changing it. ...
oma written 3 months ago by souzademedeiros0 • updated 3 months ago by adrian.altenhoff700
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Comment: C: How to remove duplicate sequences in fasta file using python?
... I like the simplicity! This method almost worked for me, but was printing empty lines and one line with only '>'. I'm not an expert in awk, so filtering results by using grep: cat one.fa two.fa | awk -v RS=">" '!a[$0]++ { print ">"$0; }' - | grep -Ev '^\s*$|^>\s*$' > answer.fa ...
written 2.5 years ago by souzademedeiros0

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