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0
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0
replies
179
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Comment:
Comment: error uploading gct file to gsea
21 days ago by
Barry Digby
★ 1.3k
1
vote
0
replies
237
views
Answer:
Answer: How to implement neoantigen sequences using WES data?
6 weeks ago by
Barry Digby
★ 1.3k
3
votes
1
reply
289
views
Answer:
Answer: Unable to save plots in R using jpeg() or png()
7 weeks ago by
Barry Digby
★ 1.3k
0
votes
0
replies
383
views
Comment:
Comment: I cannot obtain summary alignment with Bowtie2
7 weeks ago by
Barry Digby
★ 1.3k
0
votes
1
reply
383
views
Answer:
Answer: I cannot obtain summary alignment with Bowtie2
7 weeks ago by
Barry Digby
★ 1.3k
0
votes
0
replies
389
views
Comment:
Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 7 weeks ago by
Ram
41k • written 7 weeks ago by
Barry Digby
★ 1.3k
1
vote
1
reply
662
views
Answer:
Answer: identify DEGs across all conditions and per specific conditions
10 weeks ago by
Barry Digby
★ 1.3k
0
votes
1
reply
483
views
Comment:
Comment: obtaining circular RNAs' sequences from circBase
10 weeks ago by
Barry Digby
★ 1.3k
1
vote
1
reply
483
views
Answer:
Answer: obtaining circular RNAs' sequences from circBase
10 weeks ago by
Barry Digby
★ 1.3k
3
votes
0
replies
457
views
Answer:
Answer: Identifying common DEGs among multiple datasets
11 weeks ago by
Barry Digby
★ 1.3k
2
votes
0
replies
817
views
Answer:
Answer: Running python script in slurm using conda environment
12 weeks ago by
Barry Digby
★ 1.3k
3
votes
0
replies
639
views
Answer:
Answer: How to remove the gene label in heatmap RNA-seq
3 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
784
views
Comment:
Comment: No differentially expressed genes after multiple testing correction in mice
7 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
460
views
Comment:
Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
7 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
899
views
Answer:
Answer: How to run prepDE.py3?
8 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.4k
views
Answer:
Answer: Unusual FastQC sequence distribution from small RNA seq
10 months ago by
Barry Digby
★ 1.3k
2
votes
1
reply
645
views
Answer:
Answer: How do I extract gene names from different portions of my heatmap?
15 months ago by
Barry Digby
★ 1.3k
1
vote
1
reply
587
views
Comment:
Comment: circular RNA analysis workflow
15 months ago by
Barry Digby
★ 1.3k
0
votes
5
replies
2.0k
views
Missing gene symbols in bustools output
bustools
scanpy
kallisto
single-cell
scRNA
updated 17 months ago by
s.koturan
• 0 • written 3.9 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
2.5k
views
Comment:
Comment: error while testing nextflow with --genome GRCh38
17 months ago by
Barry Digby
★ 1.3k
1
vote
0
replies
551
views
Answer:
Answer: CIRIexplorer2 annotate
17 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
6.2k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
19 months ago by
Barry Digby
★ 1.3k
0
votes
0
replies
6.2k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
19 months ago by
Barry Digby
★ 1.3k
0
votes
1
reply
6.2k
views
Comment:
Comment: TCGA transcriptome data to R (DESeq2)
20 months ago by
Barry Digby
★ 1.3k
16
votes
9
replies
6.2k
views
Tutorial:
TCGA transcriptome data to R (DESeq2)
TCGA
GDC
DESeq2
updated 18 months ago by
dk0319
▴ 70 • written 2.0 years ago by
Barry Digby
★ 1.3k
2
votes
0
replies
971
views
Comment:
Comment: how does annotate circular RNA ?
2.0 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
971
views
Answer:
Answer: how does annotate circular RNA ?
2.0 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
3.0k
views
Answer:
Answer: need some help on how to use DESeq2 for TCGA data
2.0 years ago by
Barry Digby
★ 1.3k
3
votes
1
reply
817
views
Answer:
Answer: GEOquery: unable to fetch raw CEL files
2.2 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
2.7k
views
Answer:
Answer: BUSCO installation and run
2.3 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
2.8k
views
Comment:
Comment: Add NES value to GSEA plot
2.5 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
1.9k
views
Comment:
Comment: TCGA library type information
2.6 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
1.9k
views
Comment:
Comment: TCGA library type information
2.6 years ago by
Barry Digby
★ 1.3k
3
votes
0
replies
1.5k
views
Comment:
C: Getting standard 12-column format for a list of genes
2.7 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
692
views
Comment:
C: how to annotate Circular RNA gene type?
2.7 years ago by
Barry Digby
★ 1.3k
1
vote
1
reply
692
views
Comment:
C: how to annotate Circular RNA gene type?
2.7 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.5k
views
Comment:
C: nextflow set tuple issue
2.8 years ago by
Barry Digby
★ 1.3k
4
votes
1
reply
2.5k
views
Answer:
A: nextflow set tuple issue
2.8 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
8.4k
views
Comment:
C: How to plot GSEA result?
2.8 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.6k
views
Comment:
C: Which adapters to use for trimming?
2.9 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
2.6k
views
Comment:
C: Which adapters to use for trimming?
2.9 years ago by
Barry Digby
★ 1.3k
2
votes
1
reply
1.4k
views
Answer:
A: How to remove X & Y chromosome genes from RNAseq data
2.9 years ago by
Barry Digby
★ 1.3k
0
votes
1
reply
1.4k
views
Comment:
C: How to remove X & Y chromosome genes from RNAseq data
2.9 years ago by
Barry Digby
★ 1.3k
1
vote
0
replies
8.4k
views
Comment:
C: How to plot GSEA result?
2.9 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.7k
views
Comment:
C: TCGA gene and mirna expression value
2.9 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
1.5k
views
Comment:
C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.0 years ago by
Barry Digby
★ 1.3k
3
votes
2
replies
1.7k
views
Answer:
A: TCGA gene and mirna expression value
3.0 years ago by
Barry Digby
★ 1.3k
2
votes
2
replies
1.2k
views
Answer:
A: Help interpretating DESeq2 output
3.0 years ago by
Barry Digby
★ 1.3k
3
votes
2
replies
4.7k
views
Tximport > DESeq2 (sample names)
DESeq2
tximport
RNA-Seq
updated 3.0 years ago by
skgtjzw
• 0 • written 5.0 years ago by
Barry Digby
★ 1.3k
0
votes
0
replies
4.8k
views
Answer:
A: GATK Panel Of Normals (PoN)
3.1 years ago by
Barry Digby
★ 1.3k
140 results • Page
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