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179
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Comment: Comment: error uploading gct file to gsea
21 days ago by Barry Digby ★ 1.3k
1
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0
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237
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Answer: Answer: How to implement neoantigen sequences using WES data?
6 weeks ago by Barry Digby ★ 1.3k
3
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1
reply
289
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Answer: Answer: Unable to save plots in R using jpeg() or png()
7 weeks ago by Barry Digby ★ 1.3k
0
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0
replies
383
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Comment: Comment: I cannot obtain summary alignment with Bowtie2
7 weeks ago by Barry Digby ★ 1.3k
0
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1
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383
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
7 weeks ago by Barry Digby ★ 1.3k
0
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0
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389
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Comment: Comment: Normal vs Tumor - Kaplan Meier Survival Analysis
updated 7 weeks ago by 41k • written 7 weeks ago by ★ 1.3k
1
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1
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662
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Answer: Answer: identify DEGs across all conditions and per specific conditions
10 weeks ago by Barry Digby ★ 1.3k
0
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1
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483
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Comment: Comment: obtaining circular RNAs' sequences from circBase
10 weeks ago by Barry Digby ★ 1.3k
1
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1
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483
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Answer: Answer: obtaining circular RNAs' sequences from circBase
10 weeks ago by Barry Digby ★ 1.3k
3
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0
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457
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Answer: Answer: Identifying common DEGs among multiple datasets
11 weeks ago by Barry Digby ★ 1.3k
2
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0
replies
817
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Answer: Answer: Running python script in slurm using conda environment
12 weeks ago by Barry Digby ★ 1.3k
3
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0
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639
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
3 months ago by Barry Digby ★ 1.3k
0
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1
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784
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
7 months ago by Barry Digby ★ 1.3k
0
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1
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460
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Comment: Comment: Seeking Alternative Tools for Predicting Mature microRNAs from Vertebrate Animal
7 months ago by Barry Digby ★ 1.3k
0
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0
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899
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Answer: Answer: How to run prepDE.py3?
8 months ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
10 months ago by Barry Digby ★ 1.3k
2
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1
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645
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
15 months ago by Barry Digby ★ 1.3k
1
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1
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587
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Comment: Comment: circular RNA analysis workflow
15 months ago by Barry Digby ★ 1.3k
0
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5
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2.0k
views
Missing gene symbols in bustools output
bustools scanpy kallisto single-cell scRNA
updated 17 months ago by • 0 • written 3.9 years ago by ★ 1.3k
1
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1
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2.5k
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Comment: Comment: error while testing nextflow with --genome GRCh38
17 months ago by Barry Digby ★ 1.3k
1
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0
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551
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Answer: Answer: CIRIexplorer2 annotate
17 months ago by Barry Digby ★ 1.3k
0
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1
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6.2k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
19 months ago by Barry Digby ★ 1.3k
0
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0
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6.2k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
19 months ago by Barry Digby ★ 1.3k
0
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1
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6.2k
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Comment: Comment: TCGA transcriptome data to R (DESeq2)
20 months ago by Barry Digby ★ 1.3k
16
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9
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6.2k
views
Tutorial: TCGA transcriptome data to R (DESeq2)
TCGA GDC DESeq2
updated 18 months ago by ▴ 70 • written 2.0 years ago by ★ 1.3k
2
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0
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971
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Comment: Comment: how does annotate circular RNA ?
2.0 years ago by Barry Digby ★ 1.3k
1
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1
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971
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Answer: Answer: how does annotate circular RNA ?
2.0 years ago by Barry Digby ★ 1.3k
3
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0
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3.0k
views
Answer: Answer: need some help on how to use DESeq2 for TCGA data
2.0 years ago by Barry Digby ★ 1.3k
3
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1
reply
817
views
Answer: Answer: GEOquery: unable to fetch raw CEL files
2.2 years ago by Barry Digby ★ 1.3k
0
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0
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2.7k
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Answer: Answer: BUSCO installation and run
2.3 years ago by Barry Digby ★ 1.3k
1
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0
replies
2.8k
views
Comment: Comment: Add NES value to GSEA plot
2.5 years ago by Barry Digby ★ 1.3k
1
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1
reply
1.9k
views
Comment: Comment: TCGA library type information
2.6 years ago by Barry Digby ★ 1.3k
0
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1
reply
1.9k
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Comment: Comment: TCGA library type information
2.6 years ago by Barry Digby ★ 1.3k
3
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0
replies
1.5k
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Comment: C: Getting standard 12-column format for a list of genes
2.7 years ago by Barry Digby ★ 1.3k
0
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0
replies
692
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Comment: C: how to annotate Circular RNA gene type?
2.7 years ago by Barry Digby ★ 1.3k
1
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1
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692
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Comment: C: how to annotate Circular RNA gene type?
2.7 years ago by Barry Digby ★ 1.3k
0
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1
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2.5k
views
Comment: C: nextflow set tuple issue
2.8 years ago by Barry Digby ★ 1.3k
4
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1
reply
2.5k
views
Answer: A: nextflow set tuple issue
2.8 years ago by Barry Digby ★ 1.3k
1
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0
replies
8.4k
views
Comment: C: How to plot GSEA result?
2.8 years ago by Barry Digby ★ 1.3k
0
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1
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2.6k
views
Comment: C: Which adapters to use for trimming?
2.9 years ago by Barry Digby ★ 1.3k
0
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1
reply
2.6k
views
Comment: C: Which adapters to use for trimming?
2.9 years ago by Barry Digby ★ 1.3k
2
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1
reply
1.4k
views
Answer: A: How to remove X & Y chromosome genes from RNAseq data
2.9 years ago by Barry Digby ★ 1.3k
0
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1
reply
1.4k
views
Comment: C: How to remove X & Y chromosome genes from RNAseq data
2.9 years ago by Barry Digby ★ 1.3k
1
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0
replies
8.4k
views
Comment: C: How to plot GSEA result?
2.9 years ago by Barry Digby ★ 1.3k
0
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0
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1.7k
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Comment: C: TCGA gene and mirna expression value
2.9 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.5k
views
Comment: C: Why is mapper.pl from mirdeep2 producing an empty mapping file?
3.0 years ago by Barry Digby ★ 1.3k
3
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2
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1.7k
views
Answer: A: TCGA gene and mirna expression value
3.0 years ago by Barry Digby ★ 1.3k
2
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2
replies
1.2k
views
Answer: A: Help interpretating DESeq2 output
3.0 years ago by Barry Digby ★ 1.3k
3
votes
2
replies
4.7k
views
Tximport > DESeq2 (sample names)
DESeq2 tximport RNA-Seq
updated 3.0 years ago by • 0 • written 5.0 years ago by ★ 1.3k
0
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0
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4.8k
views
Answer: A: GATK Panel Of Normals (PoN)
3.1 years ago by Barry Digby ★ 1.3k
140 results • Page 1 of 3
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