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Answer: Answer: How to implement neoantigen sequences using WES data?
7 weeks ago by Barry Digby ★ 1.3k
3
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1
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291
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Answer: Answer: Unable to save plots in R using jpeg() or png()
7 weeks ago by Barry Digby ★ 1.3k
0
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1
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391
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
7 weeks ago by Barry Digby ★ 1.3k
1
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1
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664
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Answer: Answer: identify DEGs across all conditions and per specific conditions
10 weeks ago by Barry Digby ★ 1.3k
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1
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487
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Answer: Answer: obtaining circular RNAs' sequences from circBase
10 weeks ago by Barry Digby ★ 1.3k
3
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0
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458
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Answer: Answer: Identifying common DEGs among multiple datasets
11 weeks ago by Barry Digby ★ 1.3k
2
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0
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838
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Answer: Answer: Running python script in slurm using conda environment
12 weeks ago by Barry Digby ★ 1.3k
3
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0
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647
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
3 months ago by Barry Digby ★ 1.3k
0
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0
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919
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Answer: Answer: How to run prepDE.py3?
8 months ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
10 months ago by Barry Digby ★ 1.3k
2
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1
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648
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
15 months ago by Barry Digby ★ 1.3k
1
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0
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555
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Answer: Answer: CIRIexplorer2 annotate
18 months ago by Barry Digby ★ 1.3k
1
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1
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973
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Answer: Answer: how does annotate circular RNA ?
2.0 years ago by Barry Digby ★ 1.3k
3
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0
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3.0k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
2.0 years ago by Barry Digby ★ 1.3k
3
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1
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822
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Answer: Answer: GEOquery: unable to fetch raw CEL files
2.2 years ago by Barry Digby ★ 1.3k
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0
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2.7k
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Answer: Answer: BUSCO installation and run
2.3 years ago by Barry Digby ★ 1.3k
4
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1
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2.6k
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Answer: A: nextflow set tuple issue
2.8 years ago by Barry Digby ★ 1.3k
2
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1
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1.4k
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Answer: A: How to remove X & Y chromosome genes from RNAseq data
2.9 years ago by Barry Digby ★ 1.3k
3
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2
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1.7k
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Answer: A: TCGA gene and mirna expression value
3.0 years ago by Barry Digby ★ 1.3k
2
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2
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1.2k
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Answer: A: Help interpretating DESeq2 output
3.0 years ago by Barry Digby ★ 1.3k
0
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0
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4.8k
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Answer: A: GATK Panel Of Normals (PoN)
3.1 years ago by Barry Digby ★ 1.3k
3
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1
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1.2k
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Answer: C: HT-Seq count data coding gene
3.1 years ago by Barry Digby ★ 1.3k
2
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0
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1.2k
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Answer: A: Circlize genomicLabel won't plot outside.
3.1 years ago by Barry Digby ★ 1.3k
2
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0
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4.0k
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Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
3.1 years ago by Barry Digby ★ 1.3k
5
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1
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3.2k
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Answer: C: How to select differential expressed genes using DeSeq2?
3.2 years ago by Barry Digby ★ 1.3k
1
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0
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1.8k
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Answer: A: GATK4 best practices: 1500 lines of code ... !?
3.3 years ago by Barry Digby ★ 1.3k
4
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1
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6.6k
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Answer: A: How to prepare .gct file for GSEA software?
3.3 years ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: A: calculating fold change
3.3 years ago by Barry Digby ★ 1.3k
0
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0
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1.2k
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Answer: A: RNA seq data analysis
3.4 years ago by Barry Digby ★ 1.3k
0
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1
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1.9k
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Answer: A: miRDeep2 problem with reads_collapsed.fa
3.5 years ago by Barry Digby ★ 1.3k
0
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0
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7.0k
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Answer: A: Nextflow using existing Conda Environments
3.5 years ago by Barry Digby ★ 1.3k
1
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1
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13k
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Answer: A: How to create a GSEA enrichment plot for the phenotypes in R?
3.6 years ago by Barry Digby ★ 1.3k
0
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0
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1.0k
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Answer: A: miRDeep2 Mapper "Bowtie mapping tool not installed"
3.7 years ago by Barry Digby ★ 1.3k
1
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0
replies
466
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Answer: A: Predict which genes might cause treatment response or lack of response
3.7 years ago by Barry Digby ★ 1.3k
1
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1
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1.2k
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Answer: A: Where is a good place to find experienced, ongoing, bioinformatics help?
3.7 years ago by Barry Digby ★ 1.3k
0
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0
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1.8k
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Answer: A: Editing source scripts in a container
3.8 years ago by Barry Digby ★ 1.3k
3
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0
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1.4k
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Answer: A: In need of guidance: RNA-seq analysis
3.8 years ago by Barry Digby ★ 1.3k
1
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1
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1.1k
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Answer: A: How to perform iteration task inside a docker image (RNA-seq analysis)
3.8 years ago by Barry Digby ★ 1.3k
1
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1
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8.4k
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Answer: A: How to plot GSEA result?
4.1 years ago by Barry Digby ★ 1.3k
7
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0
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4.8k
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Answer: A: mireap procedure short tutorial
4.2 years ago by Barry Digby ★ 1.3k
4
votes
2
replies
5.3k
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Answer: A: Appropriate gene IDs for enrichment analysis (with clusterProfiler)
4.3 years ago by Barry Digby ★ 1.3k
0
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0
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2.6k
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Answer: A: prediction of viral miRNAs by Vmir analyzer...
4.7 years ago by Barry Digby ★ 1.3k
1
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2
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5.2k
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Answer: A: How to convert vcf to MAF ?
5.0 years ago by Barry Digby ★ 1.3k
3
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0
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4.7k
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Answer: A: Tximport > DESeq2 (sample names)
5.0 years ago by Barry Digby ★ 1.3k
2
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1
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2.2k
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Answer: A: Can I get AddOrReplaceReadGroups working for multiple files?
5.1 years ago by Barry Digby ★ 1.3k
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