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Answer: Answer: miRNA alignment and count generation
4 weeks ago by Barry Digby ★ 1.3k
2
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0
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1.7k
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Answer: Answer: Salmon quant with netflow nf-core/rnaseq -r 3.13.2
16 months ago by Barry Digby ★ 1.3k
1
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0
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745
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Answer: Answer: How to implement neoantigen sequences using WES data?
19 months ago by Barry Digby ★ 1.3k
3
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1
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4.4k
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Answer: Answer: Unable to save plots in R using jpeg() or png()
19 months ago by Barry Digby ★ 1.3k
0
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1
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1.1k
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Answer: Answer: I cannot obtain summary alignment with Bowtie2
19 months ago by Barry Digby ★ 1.3k
1
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1
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1.5k
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Answer: Answer: identify DEGs across all conditions and per specific conditions
20 months ago by Barry Digby ★ 1.3k
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1
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1.4k
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Answer: Answer: obtaining circular RNAs' sequences from circBase
20 months ago by Barry Digby ★ 1.3k
4
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0
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1.2k
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Answer: Answer: Identifying common DEGs among multiple datasets
20 months ago by Barry Digby ★ 1.3k
2
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0
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13k
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Answer: Answer: Running python script in slurm using conda environment
20 months ago by Barry Digby ★ 1.3k
3
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0
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2.4k
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Answer: Answer: How to remove the gene label in heatmap RNA-seq
20 months ago by Barry Digby ★ 1.3k
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0
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2.5k
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Answer: Answer: How to run prepDE.py3?
2.1 years ago by Barry Digby ★ 1.3k
0
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0
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2.1k
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Answer: Answer: Unusual FastQC sequence distribution from small RNA seq
2.3 years ago by Barry Digby ★ 1.3k
2
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1
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1.3k
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Answer: Answer: How do I extract gene names from different portions of my heatmap?
2.7 years ago by Barry Digby ★ 1.3k
1
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0
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926
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Answer: Answer: CIRIexplorer2 annotate
2.9 years ago by Barry Digby ★ 1.3k
1
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1
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1.6k
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Answer: Answer: how does annotate circular RNA ?
3.5 years ago by Barry Digby ★ 1.3k
3
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0
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5.1k
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Answer: Answer: need some help on how to use DESeq2 for TCGA data
3.5 years ago by Barry Digby ★ 1.3k
3
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1
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1.3k
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Answer: Answer: GEOquery: unable to fetch raw CEL files
3.7 years ago by Barry Digby ★ 1.3k
0
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0
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4.4k
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Answer: Answer: BUSCO installation and run
3.8 years ago by Barry Digby ★ 1.3k
4
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1
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3.6k
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Answer: A: nextflow set tuple issue
4.2 years ago by Barry Digby ★ 1.3k
2
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1
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2.3k
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Answer: A: How to remove X & Y chromosome genes from RNAseq data
4.4 years ago by Barry Digby ★ 1.3k
3
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3
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2.4k
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Answer: A: TCGA gene and mirna expression value
4.5 years ago by Barry Digby ★ 1.3k
2
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2
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2.1k
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Answer: A: Help interpretating DESeq2 output
4.5 years ago by Barry Digby ★ 1.3k
0
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0
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6.0k
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Answer: A: GATK Panel Of Normals (PoN)
4.5 years ago by Barry Digby ★ 1.3k
3
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1
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1.7k
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Answer: C: HT-Seq count data coding gene
4.5 years ago by Barry Digby ★ 1.3k
2
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0
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1.7k
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Answer: A: Circlize genomicLabel won't plot outside.
4.6 years ago by Barry Digby ★ 1.3k
2
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0
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5.1k
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Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
4.6 years ago by Barry Digby ★ 1.3k
5
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1
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5.1k
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Answer: C: How to select differential expressed genes using DeSeq2?
4.6 years ago by Barry Digby ★ 1.3k
1
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0
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2.7k
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Answer: A: GATK4 best practices: 1500 lines of code ... !?
4.7 years ago by Barry Digby ★ 1.3k
5
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1
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8.1k
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Answer: A: How to prepare .gct file for GSEA software?
4.7 years ago by Barry Digby ★ 1.3k
0
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0
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1.9k
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Answer: A: calculating fold change
4.8 years ago by Barry Digby ★ 1.3k
0
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0
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1.9k
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Answer: A: RNA seq data analysis
4.9 years ago by Barry Digby ★ 1.3k
0
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1
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2.9k
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Answer: A: miRDeep2 problem with reads_collapsed.fa
4.9 years ago by Barry Digby ★ 1.3k
1
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0
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9.8k
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Answer: A: Nextflow using existing Conda Environments
5.0 years ago by Barry Digby ★ 1.3k
1
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1
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18k
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Answer: A: How to create a GSEA enrichment plot for the phenotypes in R?
5.0 years ago by Barry Digby ★ 1.3k
0
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0
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1.4k
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Answer: A: miRDeep2 Mapper "Bowtie mapping tool not installed"
5.1 years ago by Barry Digby ★ 1.3k
1
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0
replies
685
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Answer: A: Predict which genes might cause treatment response or lack of response
5.1 years ago by Barry Digby ★ 1.3k
1
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1
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1.5k
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Answer: A: Where is a good place to find experienced, ongoing, bioinformatics help?
5.1 years ago by Barry Digby ★ 1.3k
0
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0
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2.8k
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Answer: A: Editing source scripts in a container
5.2 years ago by Barry Digby ★ 1.3k
3
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0
replies
1.8k
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Answer: A: In need of guidance: RNA-seq analysis
5.3 years ago by Barry Digby ★ 1.3k
1
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1
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1.5k
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Answer: A: How to perform iteration task inside a docker image (RNA-seq analysis)
5.3 years ago by Barry Digby ★ 1.3k
1
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1
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12k
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Answer: A: How to plot GSEA result?
5.5 years ago by Barry Digby ★ 1.3k
7
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0
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6.5k
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Answer: A: mireap procedure short tutorial
5.6 years ago by Barry Digby ★ 1.3k
4
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2
replies
8.0k
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Answer: A: Appropriate gene IDs for enrichment analysis (with clusterProfiler)
5.8 years ago by Barry Digby ★ 1.3k
0
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0
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3.3k
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Answer: A: prediction of viral miRNAs by Vmir analyzer...
6.1 years ago by Barry Digby ★ 1.3k
1
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2
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6.6k
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Answer: A: How to convert vcf to MAF ?
6.4 years ago by Barry Digby ★ 1.3k
3
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0
replies
5.3k
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Answer: A: Tximport > DESeq2 (sample names)
6.5 years ago by Barry Digby ★ 1.3k
2
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1
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2.9k
views
Answer: A: Can I get AddOrReplaceReadGroups working for multiple files?
6.6 years ago by Barry Digby ★ 1.3k
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