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3
votes
2
replies
1.9k
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Answer: A: TCGA gene and mirna expression value
3.4 years ago by Barry Digby ★ 1.3k
2
votes
2
replies
1.3k
views
Answer: A: Help interpretating DESeq2 output
3.4 years ago by Barry Digby ★ 1.3k
3
votes
2
replies
4.9k
views
Tximport > DESeq2 (sample names)
DESeq2 tximport RNA-Seq
updated 3.4 years ago by • 0 • written 5.4 years ago by ★ 1.3k
0
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0
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5.1k
views
Answer: A: GATK Panel Of Normals (PoN)
3.4 years ago by Barry Digby ★ 1.3k
3
votes
1
reply
1.3k
views
Answer: C: HT-Seq count data coding gene
3.5 years ago by Barry Digby ★ 1.3k
2
votes
1
reply
1.3k
views
Circlize genomicLabel won't plot outside.
Circlize
3.5 years ago by Barry Digby ★ 1.3k
2
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0
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1.3k
views
Answer: A: Circlize genomicLabel won't plot outside.
3.5 years ago by Barry Digby ★ 1.3k
2
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0
replies
4.2k
views
Answer: A: How to take input TCGA miRNA data in Limma R package for differential expression
3.5 years ago by Barry Digby ★ 1.3k
1
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0
replies
3.7k
views
Comment: C: How to select differential expressed genes using DeSeq2?
3.5 years ago by Barry Digby ★ 1.3k
0
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1
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3.7k
views
Comment: Comment: How to select differential expressed genes using DeSeq2?
8 months ago by Barry Digby ★ 1.3k
5
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1
reply
3.7k
views
Answer: C: How to select differential expressed genes using DeSeq2?
3.5 years ago by Barry Digby ★ 1.3k
0
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0
replies
2.5k
views
Comment: C: STAR index file for GRCH37
3.6 years ago by Barry Digby ★ 1.3k
0
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1
reply
1.4k
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Comment: C: DESeq2 analysis with high number of samples
3.6 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
1.0k
views
Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
3.6 years ago by Barry Digby ★ 1.3k
1
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1
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1.0k
views
Comment: C: TCGA- which files to download for analyzing differentially expressed miRNAs
3.6 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
1.9k
views
Answer: A: GATK4 best practices: 1500 lines of code ... !?
3.6 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
3.2k
views
Exporting PATH in Dockerfile
conda docker python
3.6 years ago by Barry Digby ★ 1.3k
4
votes
1
reply
7.0k
views
Answer: A: How to prepare .gct file for GSEA software?
3.6 years ago by Barry Digby ★ 1.3k
0
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0
replies
1.5k
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Answer: A: calculating fold change
3.7 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
4.9k
views
Comment: C: Specify output dir when downloading snpEff database?
3.7 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.3k
views
Answer: A: RNA seq data analysis
3.8 years ago by Barry Digby ★ 1.3k
1
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0
replies
7.0k
views
Comment: C: How to prepare .gct file for GSEA software?
3.8 years ago by Barry Digby ★ 1.3k
1
vote
1
reply
2.4k
views
Comment: C: How to deal with the abnormal samples from TCGA found in a PCA?
3.8 years ago by Barry Digby ★ 1.3k
0
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1
reply
7.7k
views
Comment: C: Nextflow using existing Conda Environments
3.8 years ago by Barry Digby ★ 1.3k
0
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1
reply
7.7k
views
Comment: C: Nextflow using existing Conda Environments
3.8 years ago by Barry Digby ★ 1.3k
0
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0
replies
2.1k
views
Comment: C: miRDeep2 problem with reads_collapsed.fa
3.9 years ago by Barry Digby ★ 1.3k
0
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1
reply
2.1k
views
Comment: C: miRDeep2 problem with reads_collapsed.fa
3.9 years ago by Barry Digby ★ 1.3k
0
votes
1
reply
2.1k
views
Answer: A: miRDeep2 problem with reads_collapsed.fa
3.9 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
7.7k
views
Comment: C: Nextflow using existing Conda Environments
3.9 years ago by Barry Digby ★ 1.3k
4
votes
7
replies
7.7k
views
Nextflow using existing Conda Environments
nextflow conda anaconda
updated 3.9 years ago by 81k • written 3.9 years ago by ★ 1.3k
0
votes
0
replies
7.7k
views
Answer: A: Nextflow using existing Conda Environments
3.9 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
14k
views
Comment: C: How to create a GSEA enrichment plot for the phenotypes in R?
3.9 years ago by Barry Digby ★ 1.3k
1
vote
1
reply
14k
views
Answer: A: How to create a GSEA enrichment plot for the phenotypes in R?
3.9 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.3k
views
Comment: C: Where is a good place to find experienced, ongoing, bioinformatics help?
4.0 years ago by Barry Digby ★ 1.3k
1
vote
1
reply
2.3k
views
Comment: C: Massive L2FC in DESeq2
4.0 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
852
views
circRNA - miRNA ceRNA network construction
circRNA miRNA ceRNA CSCD circinteractome
4.0 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.1k
views
Answer: A: miRDeep2 Mapper "Bowtie mapping tool not installed"
4.0 years ago by Barry Digby ★ 1.3k
1
vote
0
replies
524
views
Answer: A: Predict which genes might cause treatment response or lack of response
4.0 years ago by Barry Digby ★ 1.3k
1
vote
1
reply
1.3k
views
Answer: A: Where is a good place to find experienced, ongoing, bioinformatics help?
4.0 years ago by Barry Digby ★ 1.3k
0
votes
1
reply
4.1k
views
Comment: C: can I use some interesting genes(such as a subset of DEGs from RNA-seq result) t
4.1 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.9k
views
Comment: C: Editing tools script in a docker container
4.1 years ago by Barry Digby ★ 1.3k
1
vote
4
replies
1.9k
views
Editing tools script in a docker container
docker dockerhub singularity
4.1 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.9k
views
Answer: A: Editing source scripts in a container
4.1 years ago by Barry Digby ★ 1.3k
3
votes
0
replies
1.5k
views
Answer: A: In need of guidance: RNA-seq analysis
4.2 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
1.2k
views
Comment: C: How to perform iteration task inside a docker image (RNA-seq analysis)
4.2 years ago by Barry Digby ★ 1.3k
1
vote
1
reply
1.2k
views
Answer: A: How to perform iteration task inside a docker image (RNA-seq analysis)
4.2 years ago by Barry Digby ★ 1.3k
6
votes
8
replies
2.7k
views
bustools transcript to gene file
bustools kallisto scRNA nextflow ensembl
4.2 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
2.2k
views
Comment: C: Missing gene symbols in bustools output
4.2 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
2.2k
views
Comment: C: Missing gene symbols in bustools output
4.2 years ago by Barry Digby ★ 1.3k
0
votes
0
replies
4.5k
views
Comment: C: How to analyze the RNAseq paired samples with DESeq2?
4.2 years ago by Barry Digby ★ 1.3k
144 results • Page 2 of 3
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