User: timing

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timing10
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10
Status:
New User
Location:
UK/Cambridge
Website:
http://timingliu.com/
Last seen:
1 month ago
Joined:
2 years, 2 months ago
Email:
v*********@gmail.com

Research Assistant | NUS

Medical Student | Cambridge

 

Posts by timing

<prev • 7 results • page 1 of 1 • next >
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Comment: C: Extract vcf file header and save it in Key-Value csv
... I'd use `grep '^#'` instead to capture the header for the table ...
written 6 weeks ago by timing10
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Comment: C: How should I refer to one type of dbSNP in publications
... Thanks! May I kindly check nomenclature like rs268 (G) is acceptable when referring to the substitution by G? ...
written 11 months ago by timing10
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Comment: C: How should I refer to one type of dbSNP in publications
... Thank you very much! In the case of multiple substitutions e.g. A is substituted by both G and T, may I know which terminology can I use to specifically refer to either G or T? ...
written 11 months ago by timing10
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How should I refer to one type of dbSNP in publications
... Assuming I would like to discuss something interesting about the gene when an adenine was substituted by a guanine (A>G as recorded in [rs268](https://www.ncbi.nlm.nih.gov/snp/rs268)), what is the appropriate nomenclature for me to do so? Is it appropriate to say **rs268 variant** when referring ...
snp written 11 months ago by timing10 • updated 11 months ago by Emily_Ensembl21k
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Comment: C: Last column in UCSC cytoBands.txt files
... I have read the wikipedia page but I am still not sure about some of the annotations in the fifth column. I suppose gneg means Giemsa stain positive and gpos means positive, but I am still unsure the difference between gpos25 and gpos50, gpos75, gpos100. I am also not sure what gvar and stalk refer ...
written 13 months ago by timing10
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Comment: C: Last column in UCSC cytoBands.txt files
... the link is no longer valid ...
written 13 months ago by timing10
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How does bedtools bamtobed calculate end position
... I downloaded toy.sam from https://raw.githubusercontent.com/samtools/samtools/develop/examples/toy.sam to check how bedtools calculate the end position. Here is what I have done: I converted the toy.sam to bam file with samtools and then to bed file with bedtools (toy.bed). Then I used R (with tid ...
bedtools bed bam written 15 months ago by timing10 • updated 15 months ago by John Marshall2.0k

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Supporter 11 months ago, voted at least 25 times.

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