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1
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2
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3.2k
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Comment: C: Conservation score for selected species
updated 4.4 years ago by 43k • written 8.5 years ago by 12k
0
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0
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6.0k
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Comment: C: htseq-count overcounting non-unique alignments
updated 4.4 years ago by 43k • written 8.6 years ago by 12k
0
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1
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3.5k
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Comment: C: Tophat 'prep_reads error": beginning of quality values record not found!
updated 4.4 years ago by 43k • written 8.6 years ago by 12k
0
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1
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3.5k
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Comment: C: Tophat 'prep_reads error": beginning of quality values record not found!
updated 4.4 years ago by 43k • written 8.6 years ago by 12k
1
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0
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1.9k
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Answer: Answer: Extract the DNA sequence header!
updated 4.4 years ago by 43k • written 8.6 years ago by 12k
1
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1
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4.8k
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Comment: C: Trimmomatics parameters for WGS data quality improvement
updated 4.4 years ago by 43k • written 8.7 years ago by 12k
0
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1
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2.2k
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Comment: C: Tophat mapping less reads (and less properly paired) when more real -r is specif
updated 4.4 years ago by 43k • written 8.7 years ago by 12k
0
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1
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2.2k
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Answer: Answer: Tophat mapping less reads (and less properly paired) when more real -r is specif
updated 18 months ago by 43k • written 8.7 years ago by 12k
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0
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4.8k
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Comment: C: Problems with STAR mapping output
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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3.8k
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Comment: C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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1
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3.8k
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Comment: C: Solid / Colorspace with bowtie : ERRO -> Extra parameter(s) specified
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
1
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0
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18k
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Comment: C: Where To Download Mouse Mm10 Dbsnp Database With Vcf Format
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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5.1k
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Comment: C: error in samfile header
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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5.1k
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Comment: C: error in samfile header
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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3.6k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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1
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3.6k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
0
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2
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3.6k
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Comment: C: Identify genes in a tophat aligned bam/sam file
updated 4.5 years ago by 43k • written 8.8 years ago by 12k
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0
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25k
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Comment: Comment: How to determine reference genome that was used for alignment given BAM with obs
updated 15 months ago by 43k • written 8.9 years ago by 12k
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0
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15k
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Comment: C: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 4.5 years ago by 43k • written 9.2 years ago by 12k
2
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0
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15k
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Answer: A: Easiest way to compute RNA-Seq mapping stats (exons, introns, intergenic)?
updated 4.5 years ago by 43k • written 9.2 years ago by 12k
1
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1
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2.8k
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Answer: A: how to export RNA-seq reads which mapped to genes?
updated 4.5 years ago by 43k • written 9.5 years ago by 12k
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0
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2.6k
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Comment: C: Annotation of Rat WGS data by AnnoVar
updated 4.5 years ago by 43k • written 9.5 years ago by 12k
1
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0
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6.7k
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Answer: A: finding copy number variation from bam file.
updated 4.5 years ago by 43k • written 9.6 years ago by 12k
1
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0
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3.1k
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Comment: C: SNP database alignment
updated 4.5 years ago by 43k • written 9.6 years ago by 12k
1
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0
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5.8k
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Comment: C: tophat- paired end reads combined in one file
updated 4.5 years ago by 43k • written 9.6 years ago by 12k
0
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0
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5.6k
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Comment: C: convert from solid fastq to sanger fastq
updated 4.5 years ago by 43k • written 9.7 years ago by 12k
0
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1
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3.5k
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Comment: C: Differences in read numbers - Bowtie2 output
updated 4.5 years ago by 43k • written 9.7 years ago by 12k
1
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0
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2.5k
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Answer: A: annotate VCF file with LRG ?
updated 4.5 years ago by 43k • written 9.8 years ago by 12k
0
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1
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2.2k
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Comment: C: Samtools: remove reads whose mate does not map as expected
updated 4.5 years ago by 43k • written 9.8 years ago by 12k
1
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1
reply
5.0k
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Comment: C: Align short reads to multiple reference sequence
updated 4.5 years ago by 43k • written 9.8 years ago by 12k
4
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1
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18k
views
Answer: Answer: How to extract reads in a specific region from a BAM file and also their mates m
updated 2.4 years ago by 43k • written 9.8 years ago by 12k
0
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1
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3.8k
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Answer: A: Fasta with Common SNPs masked
updated 4.5 years ago by 43k • written 9.8 years ago by 12k
2
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0
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8.4k
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Answer: A: Calling heterozygous and homozygous SNPs with SAMtools or VCF ?
updated 4.5 years ago by 43k • written 9.8 years ago by 12k
1
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0
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2.6k
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Answer: A: SHRiMP output sam with unavaliable quality
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
0
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1
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3.7k
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Answer: A: How to combine and make .fai for reference genome from chromosome-specific fasta
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
0
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1
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3.7k
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Comment: C: Option "Calmd" For Whole-Exome Is Very Confusing:
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
0
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1
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3.7k
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Comment: C: Option "Calmd" For Whole-Exome Is Very Confusing:
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
2
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1
reply
37k
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Answer: A: Compare 2 VCF files
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
3
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1
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3.4k
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Answer: A: Discard reads with low quality
updated 4.5 years ago by 43k • written 9.9 years ago by 12k
0
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1
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9.6k
views
Comment: C: TopHat paramertes " -G/--GTF <GTF/GFF3 file>
updated 4.5 years ago by 43k • written 10.0 years ago by 12k
1
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0
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2.6k
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Comment: C: Pindel For Detecting Translocation Events
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
1
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0
replies
8.4k
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Comment: C: Gatk Realignertargetcreator
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
1
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1
reply
9.6k
views
Answer: A: Insert Size For Each Bam Entry
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
0
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0
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4.0k
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Comment: C: Calculating Fpkm/Rpkm For Each Read Group Given A Gtf File
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
0
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1
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32k
views
Answer: A: Calculate The Frequency Of Nucleotides At Each Position In An Mpileup File
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
2
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1
reply
10k
views
Answer: A: Generating Counts Data From Fastq Sequence Files
updated 4.5 years ago by 43k • written 10.1 years ago by 12k
0
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0
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6.2k
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Comment: C: Per Sample Mpileup Output From Merged Bam File
updated 4.5 years ago by 43k • written 10.4 years ago by 12k
0
votes
1
reply
11k
views
Comment: C: Paired-End Reads Alignment For Variant Calling ?
updated 4.5 years ago by 43k • written 10.8 years ago by 12k
0
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1
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11k
views
Answer: A: Paired-End Reads Alignment For Variant Calling ?
updated 4.5 years ago by 43k • written 10.8 years ago by 12k
0
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1
reply
2.7k
views
Comment: C: TopHat2 number of mapped reads?
updated 4.6 years ago by 43k • written 10.0 years ago by 12k
1,161 results • Page 2 of 24
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