User: vermaakhilkr01

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Posts by vermaakhilkr01

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How to extract hypervariable region of mitochondrial dna from its fasta file?
... Recently I've done some analysis on mitochondrial DNA and now I want to run the same analysis on only hypervariable regions of mitochondrial DNA to see whether the changes that I have observed are linked to only hypervariable regions or not. To do that, I'll need to make new fasta files from the mit ...
genome gene sequence written 1 day ago by vermaakhilkr010
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Topology file creation
... How can we use Charmm36 for creating a topology file for Polyoxometalates(Wells-Dawson structure)? ...
topology gromacs molecular dynamics written 28 days ago by vermaakhilkr010
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How to integrate the transcriptomics data with kinetic metabolic models?
... I have created a convenience kinetics model. Now, I want to integrate the transcriptomic data with my convenience kinetics* model for altering/weighing the kinetic parameter values. I read some publications a bit similar to this work but couldn't get any proper idea of doing it in the right way. D ...
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Comment: C: Introduction to Structural Bioinformatics
... Any resource from where I can gap the theoretical bridge that I have to read the publications in this area. As I tried reading a couple of them but couldn't keep up with it. ...
written 5 months ago by vermaakhilkr010
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Introduction to Structural Bioinformatics
... My undergraduate thesis is on the topic "Ligand design from protein-protein interfaces" and my PI has asked me to learn the basics of Structural bioinformatics over the summer so that I'll be able to start with my project as I begin my next semester(last week of July). Can someone please suggest me ...
structural bioinformatics protein written 5 months ago by vermaakhilkr010 • updated 5 months ago by Jean-Karim Heriche21k
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Comment: C: How can I run a same command in mac terminal for multiple files in a folder?
... It's creating only 1 output file. (actually, it's rewriting the same output file for every input file) ...
written 17 months ago by vermaakhilkr010
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Comment: C: How can I run a same command in mac terminal for multiple files in a folder?
... Mouse genome. And RAM isn't the problem. I've got a RAM 64 GB desktop(Mac, currently using) and 192 GB RAM Workstation Dell. ...
written 17 months ago by vermaakhilkr010
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How can I run a same command in mac terminal for multiple files in a folder?
... How can I run the same command in mac terminal for multiple files in a folder? The files are named like `24538_7#1_paired1.fq`, `24538_7#1_paired2.fq`, `24538_7#2_paired1.fq`, `24538_7#2_paired2.fq`, `24538_7#3_paired1.fq`, `24538_7#3_paired2.fq`, and so on. The command is: STAR --runThreadN 1 ...
alignment rna-seq sequencing written 17 months ago by vermaakhilkr010 • updated 17 months ago by genomax74k

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