User: cf556
cf556 • 10
- Reputation:
- 10
- Status:
- New User
- Location:
- Last seen:
- 3 months, 2 weeks ago
- Joined:
- 1 year, 11 months ago
- Email:
- s**************@gmail.com
Posts by cf556
<prev
• 9 results •
page 1 of 1 •
next >
0
votes
1
answer
104
views
1
answers
Comment:
C: Creating a bedgraph
... Changing the extension worked. Thanks ...
written 3 months ago by
cf556 • 10
0
votes
1
answer
104
views
1
answers
Comment:
A: Creating a bedgraph
... Changing the extension worked. Thanks! ...
written 3 months ago by
cf556 • 10
2
votes
1
answer
104
views
1
answer
... Hello, I have a file in bed format (chr, start, stop) and also a value associated with each peak. I would like to scale my peaks by the assigned value when viewing them in IGV. I was told bedgraph was the way to do this. I currently can get the peaks to appear in IGV but they have the values listed ...
written 3 months ago by
cf556 • 10
1
vote
1
answer
135
views
1
answer
... I have been spending a lot of time looking at scRNA seq and am now looking at some bulk data and have a few questions. Right now I am attempting to determine if a subset of known genes (32) are differentially expressed across two samples. I am not sure how to go about this considering I essentially ...
0
votes
0
answers
117
views
0
answers
... I am using the 10x possorted_bam.bam file to map edits in a gene of intrest. I isolated the SAM reads using `samtools view possorted_bam.bam | grep $gene_name > out.sam`. I then have been parsing the SAM file using a custom python script. When I go to The IGV coverage plot and hover over one the ...
written 4 months ago by
cf556 • 10
5
votes
1
answer
120
views
1
answer
... Is there a way to convert from genome build to Ens.db version? (ex. grch38 -> EnsDb.Hsapiens.v87) ...
written 4 months ago by
cf556 • 10
• updated
4 months ago by
Emily_Ensembl ♦ 20k
0
votes
0
answers
105
views
0
answers
... I am looking at motif accessibility in mouse. Is the vertebrate collection (JASPAR) thought to be good enough for finding motifs, or should I try to subset by only human or mouse TFs? ...
written 4 months ago by
cf556 • 10
0
votes
0
answers
192
views
0
answers
... Hello, I am not sure if this is the best place to post this, but I figured here I have the best chance of getting an answer, currently I am trying to run ascend's runDESeq() function and am getting the following error.
runDESeq(em.set, group = "cluster", parallel = FALSE, method = "pooled-CR")
...
0
votes
0
answers
446
views
0
answers
... I attempted to use KEGGprofile's convertId() to get my RNA-seq counts into NCBI gene IDs. I think the genes were given to me in mgi_symbol format. After running convertId() I revived the warning message, repeated until warnings() maxed out:
1: In FUN(newX[, i], ...) : NAs introduced by coercion ...
written 23 months ago by
cf556 • 10
Latest awards to cf556
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 784 users visited in the last hour