User: 2405592M

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2405592M0
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Posts by 2405592M

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Comment: C: How to process paired end data (using fastq-dump) to get Fw and Rv files
... Thanks Devon! 2 questions. 1) what would the command be? I've tried `fastq-dump --split-3 SRR1909107` but I'm still getting 1 fastq file ? 2) With regards to the ENA, can I download directly from the command line or would I have to manually download these files from the ENA website? Appreciate the h ...
written 11 days ago by 2405592M0
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How to process paired end data (using fastq-dump) to get Fw and Rv files
... Hi guys. I donwloaded a fastq file using the fast-dump command (sra toolkit) to get paired end data that I want to analyse. However, the fastq file comes up as one file (was expecting two; Fw and Rv). I want to use trimmomatic which needs two input files. How do I get around this? New to the scene ...
trimmomatic fastq sra toolkit rna-seq written 11 days ago by 2405592M0 • updated 11 days ago by Devon Ryan81k

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