User: aluesley1
aluesley1 • 20
- Reputation:
- 20
- Status:
- New User
- Location:
- Last seen:
- 1 day, 11 hours ago
- Joined:
- 1 week, 3 days ago
- Email:
- a********@sheffield.ac.uk
Posts by aluesley1
<prev
• 4 results •
page 1 of 1 •
next >
0
votes
0
answers
57
views
0
answers
... I am attempting to do a DEA analysis of matched paired BRCA normal tumour samples using TCGAbiolinks. When I do an analysis of my samples using this formula
dataDEGsMatched <- TCGAanalyze_DEA(mat1 = MatchedTPdataFilt,
mat2 = MatchedNTdataFilt,
...
written 1 day ago by
aluesley1 • 20
1
vote
1
answer
117
views
1
answers
... Ah thank you so much, such a silly error!
When I used GDCDataCommons to identify files for matched paired samples for gene expression it came back with 112 but using the correct code with TCGAbiolinks find 113 which is a bit confusing. ...
written 2 days ago by
aluesley1 • 20
3
votes
1
answer
117
views
1
answer
... I am trying to use BRCA data downloaded using TCGAbiolinks to do a differential expression analysis.
I want to do an analysis of the matched-paired tumour-normal samples but can't work out how to identify these cases from the samples I have.
This is the code I have so far and my attempt to subset ...
written 3 days ago by
aluesley1 • 20
• updated
2 days ago by
Kevin Blighe ♦ 21k
4
votes
2
answers
91
views
2
answers
... Hi, sorry if this is a bit basic but I'm very new to R.
I am working in Rstudio and I have gene expression data downloaded using TCGAbiolinks, I have downloaded it and prepared it into a RangedSummarizedObject so it includes the clinical data.
I want to subset the data based on this clinical data ...
written 10 days ago by
aluesley1 • 20
• updated
10 days ago by
Friederike • 1.8k
Latest awards to aluesley1
No awards yet. Soon to come :-)
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 714 users visited in the last hour