User: fabio.demartino2

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Posts by fabio.demartino2

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Comment: C: Subset reads from RNAseq .bam file
... Hi Vijay, thank you very much for your nice and exhaustive reply, your suggestion let my code working now. Indeed, it was a problem related to the usage of an older version of samtools, now I updated it and it was fine. Anyway, I converted the resulting .bam file to .sam so that I could check that ...
written 7 weeks ago by fabio.demartino20
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Comment: C: Subset reads from RNAseq .bam file
... Hi Fin, Yes, it creates a .bam file with the name standard-output.txt that is not where I would like my output file to be (I specify in my script the path of my wanted output .bam file), even though this is my whole command. Thank you very much for your kind and prompt reply. ...
written 7 weeks ago by fabio.demartino20
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Subset reads from RNAseq .bam file
... Hello! I am pretty new to the bioinformatic field and I am dealing with some RNAseq data. I am trying to run the protocol described in Callari et al. BMC Genomics 2018 in order to discriminate mouse and human reads into my PDX-derived samples. In order to do so, as suggested in the paper and follo ...
unix rna-seq written 7 weeks ago by fabio.demartino20
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Subset reads from bam file
... Hello! I am pretty new to the bioinformatic field and I am dealing with some RNAseq data. I am trying to run the protocol described in Callari et al. BMC Genomics 2018 in order to discriminate mouse and human reads into my PDX-derived samples. In order to do so, as suggested in the paper and follo ...
alignment sequence rna-seq written 3 months ago by fabio.demartino20 • updated 3 months ago by h.mon19k

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