User: nathaniel.schleif

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Posts by nathaniel.schleif

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Genome Assembly Reference
... Hey all! I am just wondering if anyone could recommend a reference for a review for current genome assembly approaches? Specifically in plants if possible. I found this review which looks really solid: https://dx.doi.org/10.1101%2Fgr.131383.111 However it is also quite old and I was hoping to get so ...
assembly written 3 months ago by nathaniel.schleif0
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Draft Genome from Parents
... Hello all - I was wondering if it is possible to generate an assembled genome using the parental information. Specifically, I am working in plants and was hoping to be able to infer the genome of a progeny given that we have assemblies of the parental lines. I have been unsuccessful in finding a sol ...
assembly written 3 months ago by nathaniel.schleif0
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RNAseq Assembly in Diversity Panels
... I am currently trying to find out what options are available for assembly of RNAseq reads of many individuals within a diverse panel of plants. I work in corn, in which we currently have a few reference genomes available. I currently have access to RNAseq data from seedling stage plants in a wide di ...
assembly rna-seq written 4 months ago by nathaniel.schleif0
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Ensembl: Genes versus Transcripts
... Going under the Ensembl one can look up particular genes as well as particular transcripts. In the process of doing so you can view the sequence, such as the [sequence here][1]. Now I understand that a particular gene can have many different transcripts (the gene I link in this instance has 8 differ ...
gene annotation ensembl written 10 months ago by nathaniel.schleif0 • updated 10 months ago by finswimmer11k

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