User: Dracaena
Dracaena • 40
- Reputation:
- 40
- Status:
- New User
- Location:
- Last seen:
- 11 months, 3 weeks ago
- Joined:
- 2 years, 7 months ago
- Email:
- p***************@gmail.com
Posts by Dracaena
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... Thank you! I have provided a link to the combo object ...
written 11 months ago by
Dracaena • 40
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... Thanks! Included the image now.
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written 11 months ago by
Dracaena • 40
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... Hi guys,
I have ran into some troubles making a population graph using popgraph/ggplot in R. More specifically, I want each module in a different color and I try to do so using `geom_edgeset(color = module)` and `scale_colors_manual( values = nodecolors)`. What happens is that every node just color ...
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... Thanks for the fast reply! I appreciate it. I have used the command line blast. So these value I have are out of this blast. Now I blasted the sequence in the browser using NCBI. The results for *A. thaliana* turn up the same as. The result for *A. chinensis* however are totally different with no go ...
written 2.2 years ago by
Dracaena • 40
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... Hi guys,
I am a little bit stuck in choosing the right blast result. I have a protein sequence of a non model organism I am interested in (*Primula veris*, plant). I have successfully performed a blast for this protein against 2 databases, 1 being *A. thaliana* (one of the best reviewed and most re ...
written 2.2 years ago by
Dracaena • 40
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... This solved it for me! Thanks, altough I don't understand why some people have the opposite problem, i.e. that it does not work withouth adding .fasta. ...
written 2.2 years ago by
Dracaena • 40
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... Hi guys,
I just downloaded a protein fasta file for Arabidopsis which I want to blast my data to. What I did is, I have put the fasta file in a folder, I have used the "makeblastdb" command:
Building a new DB, current time: 11/28/2018 11:21:43
New DB name: /mnt/d/Primula/Databases/Athali ...
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... Ok guys, I just tried adding the TMP_DIR in the config file and it worked. Picard Tools used that DIR as temp. Poolparty does not mention that this is possible, but apparantly it is. Nice! ...
written 2.2 years ago by
Dracaena • 40
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... Hi all,
I am using a pipeline to align and analyze NGS data called "Poolparty" ( https://github.com/StevenMicheletti/poolparty ). Overall it's a great way to do so since it delivers both VCF and sync (popoolation) files. The only problem is, that I don't have enough space in my /tmp directory and t ...
written 2.2 years ago by
Dracaena • 40
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... Sorry, I confused it with SAMtools. ...
written 2.3 years ago by
Dracaena • 40
Latest awards to Dracaena
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For Fst calculation with VCFtools
Popular Question
2.1 years ago,
created a question with more than 1,000 views.
For BLAST Database error: No alias or index file found for protein database
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