User: Dracaena

gravatar for Dracaena
Dracaena40
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40
Status:
New User
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Last seen:
11 months, 3 weeks ago
Joined:
2 years, 7 months ago
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p***************@gmail.com

Posts by Dracaena

<prev • 16 results • page 1 of 2 • next >
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Comment: C: issue with node colors while making a popgraph using ggplot/popgraph
... Thank you! I have provided a link to the combo object ...
written 11 months ago by Dracaena40
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Comment: C: issue with node colors while making a popgraph using ggplot/popgraph
... Thanks! Included the image now. ...
written 11 months ago by Dracaena40
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issue with node colors while making a popgraph using ggplot/popgraph
... Hi guys, I have ran into some troubles making a population graph using popgraph/ggplot in R. More specifically, I want each module in a different color and I try to do so using `geom_edgeset(color = module)` and `scale_colors_manual( values = nodecolors)`. What happens is that every node just color ...
R ggplot popgraph populationgraph map written 11 months ago by Dracaena40 • updated 11 months ago by zx87549.9k
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Comment: C: Choosing the right BLAST result when using multiple databases
... Thanks for the fast reply! I appreciate it. I have used the command line blast. So these value I have are out of this blast. Now I blasted the sequence in the browser using NCBI. The results for *A. thaliana* turn up the same as. The result for *A. chinensis* however are totally different with no go ...
written 2.2 years ago by Dracaena40
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Choosing the right BLAST result when using multiple databases
... Hi guys, I am a little bit stuck in choosing the right blast result. I have a protein sequence of a non model organism I am interested in (*Primula veris*, plant). I have successfully performed a blast for this protein against 2 databases, 1 being *A. thaliana* (one of the best reviewed and most re ...
proteinblast blast written 2.2 years ago by Dracaena40
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Comment: C: BLAST Database error: No alias or index file found for protein database
... This solved it for me! Thanks, altough I don't understand why some people have the opposite problem, i.e. that it does not work withouth adding .fasta. ...
written 2.2 years ago by Dracaena40
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BLAST Database error: No alias or index file found for protein database
... Hi guys, I just downloaded a protein fasta file for Arabidopsis which I want to blast my data to. What I did is, I have put the fasta file in a folder, I have used the "makeblastdb" command: Building a new DB, current time: 11/28/2018 11:21:43 New DB name: /mnt/d/Primula/Databases/Athali ...
database blast error written 2.2 years ago by Dracaena40 • updated 2.2 years ago by Joe18k
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Answer: A: Picard Tools runs out of space when running Poolparty pipeline
... Ok guys, I just tried adding the TMP_DIR in the config file and it worked. Picard Tools used that DIR as temp. Poolparty does not mention that this is possible, but apparantly it is. Nice! ...
written 2.2 years ago by Dracaena40
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Picard Tools runs out of space when running Poolparty pipeline
... Hi all, I am using a pipeline to align and analyze NGS data called "Poolparty" ( https://github.com/StevenMicheletti/poolparty ). Overall it's a great way to do so since it delivers both VCF and sync (popoolation) files. The only problem is, that I don't have enough space in my /tmp directory and t ...
ngs next-gen picard tools poolparty out of space written 2.2 years ago by Dracaena40
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Comment: C: Fetch gene names from SNP coordinates
... Sorry, I confused it with SAMtools. ...
written 2.3 years ago by Dracaena40

Latest awards to Dracaena

Popular Question 2.1 years ago, created a question with more than 1,000 views. For Fst calculation with VCFtools
Popular Question 2.1 years ago, created a question with more than 1,000 views. For BLAST Database error: No alias or index file found for protein database

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