User: mayara.salvian

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Posts by mayara.salvian

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Comment: C: vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix
... Hello finswimmer, These are the first seven lines of my file: #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ID1* ID2* ID3* ID4* ID5* chr1 POS1 ID1 A G . . . GT 0/0 0/1 0/0 0/0 0/1 chr1 POS2 ID2 T C . . . GT 0/1 0/1 0/0 0/0 0/0 chr1 POS3 ID3 G A . . . GT 0/0 0/1 0/1 0/0 0/ ...
written 4 days ago by mayara.salvian10
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Comment: C: vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix
... The output of the command showed me only the following columns: #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT ID1 ID2 ID3 ... IDn Where: ID1, ID2, ID3 until IDn are the samples' ID. ...
written 4 days ago by mayara.salvian10
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Comment: C: vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix
... Yes, according with the error message there is no genotype in my vcf. However I checked my file using your suggestion and there is genotype on it. ...
written 4 days ago by mayara.salvian10
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vcftools Error: Require Genotypes in VCF file in order to output as 0/1/2 matrix.
... Hi everyone, I have a vcf-file and I'm trying to convert my vcf file into 012 genotype matrix using the following code: vcftools --vcf myfile.vcf --012 --out out_file I didn't have problems when I run this code before, however now the following error message appears: > Error: Require Gen ...
vcf vcftools written 4 days ago by mayara.salvian10 • updated 4 days ago by Pierre Lindenbaum112k

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