User: mayara_salvian

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Posts by mayara_salvian

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How To Split Vcf Files
... I have a vcf file with 60 animals (columns) and I would like to split these animals in 10 subset with 6 animals chosen randomly per group. I'm using the following script, but it's not working: head -n 60 my.vcf | grep "^#" > header grep -v "^#" out.subgrupos.vcf > animals ...
vcf vcftools written 5 months ago by mayara_salvian0 • updated 5 months ago by Pierre Lindenbaum114k
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Remove columns from the VCF file using vcftools
... I have a vcf file and I would like to remove four columns (CHROM,POS,ID,REF). I used the following command to extract these columns of my vcf file, but it's not working. vcf-subset -c CHROM,POS,ID,REF my.vcf > out.vcf What else should I add to that command? ...
vcftools written 5 months ago by mayara_salvian0 • updated 5 months ago by genomax58k

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