User: mlweilert

gravatar for mlweilert
mlweilert10
Reputation:
10
Status:
New User
Location:
Stowers Institute for Medical Research
Website:
https://www.stowers.org/
Last seen:
9 months, 1 week ago
Joined:
1 year, 9 months ago
Email:
m********@gmail.com

Posts by mlweilert

<prev • 3 results • page 1 of 1 • next >
0
votes
2
answers
1.3k
views
2
answers
Comment: C: ChIP-nexus peak call
... In addition, it is possible to boost your MACS2 peak call on exo/nexus data by running `macs2 callpeak –g dm –keep-dup=all –call-summits --ext-size 150 --shift -75`. By extending the fragment sizes and then recentering them, you are in a sense simulating ChIP-seq data. However, keep in mind that if ...
written 9 months ago by mlweilert10
1
vote
1
answer
1.7k
views
1
answers
Answer: A: Error in .normargSEW0(start, "start") : 'start' must be a numeric vector (or
... Your problem lies with the line: gr1 = with(x1, GRanges(chr, IRanges(start=start, end=stop))) You are inputting a data.frame object into this command and relying on some assumptions. Check the header information on your data.frame object and make sure the data.frame column names match up to wh ...
written 20 months ago by mlweilert10
0
votes
2
answers
1.3k
views
2
answers
Answer: A: ChIP-nexus peak call
... In addition to the answer by Satyajeet Khare, there are two other papers published on this information: [PeakXus][1] and [QNexus][2]. Each has their own strengths and weaknesses, so it is a good idea to read the associated papers carefully. Additionally, ChIP-nexus data provides strand-specific in ...
written 21 months ago by mlweilert10

Latest awards to mlweilert

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1991 users visited in the last hour