User: giovannaventola3es9

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Posts by giovannaventola3es9

<prev • 31 results • page 1 of 4 • next >
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Comment: C: Allelic-Specific RNA-Seq pipeline
... I asked you what you think of GATK, since I need a faster and more reliable result. anyway thanks ...
written 29 days ago by giovannaventola3es930
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Comment: C: Allelic-Specific RNA-Seq pipeline
... What means that it is not an easy task? I need a fast pipeline, I thought of GATK. What do you think? Thanks ...
written 29 days ago by giovannaventola3es930
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Comment: C: Allelic-Specific RNA-Seq pipeline
... I do not understand. What means the genome is phased? I have 30 samples of mouse rna-seq. Can you recommend the best pipeline? ...
written 29 days ago by giovannaventola3es930
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Comment: C: Allelic-Specific RNA-Seq pipeline
... Sorry, but SCALE is only for Single-Cell RNA Sequencing? And for GATK, which is the pipeline to follow? In other words, should I first identify SNPs and than use ASEReadCounter? Thanks ...
written 4 weeks ago by giovannaventola3es930
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Comment: C: Is it possible to run an Allele Specific Expression (ASE) experiment with just R
... I don't understad. What is the correct pipeline for Allele Specific Expression? Thanks ...
written 4 weeks ago by giovannaventola3es930
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Allelic-Specific RNA-Seq pipeline
... Hi Colleagues, Could anyone recommend a fast and accurate pipeline for the Allele-Specific RNA-seq? As output I would like an expression matrix. Thanks for all. ...
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Comment: C: Orthology and Phylogenetic Analysis
... the original sample represents one genome. ...
written 5 months ago by giovannaventola3es930
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Comment: C: Orthology and Phylogenetic Analysis
... Sorry, But I don't understand. I have different species distribution and I have several proteins obtained to Blast2Go software after scaffold recostruction. So I would like to perform a phylogenetic and othologous analysis. Is it possible? ...
written 5 months ago by giovannaventola3es930
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Comment: C: Orthology and Phylogenetic Analysis
... I'm new in this field. For better Understand, I have about 18.000 protein sequences obtained to genome de novo analysis. So I would like to recostruct the phylogenetic analysis, to identify orthologous sequences and a phylogenetic tree. how is this done? are there some tools? Can I help me? Thanks ...
written 5 months ago by giovannaventola3es930
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Comment: C: BBSplit xenograft Human-Mouse- RawCount
... yes, it is so!!! However, I used -s 2 and I obtained a low level count. I don't know if there is a DNA contamination... but what would this mean? ...
written 6 months ago by giovannaventola3es930

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