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Comment: Comment: Non-zero expression counts from deleted genes
12 months ago by loughrae ▴ 90
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3
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616
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Non-zero expression counts from deleted genes
TPM RNA-seq copy-number TCGA
updated 12 months ago by 3.9k • written 12 months ago by ▴ 90
1
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1
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436
views
Can you compare the abundance of different proteins within a sample?
CCLE TCGA proteomics
updated 22 months ago by 81k • written 22 months ago by ▴ 90
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0
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456
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TCGA patient death dates
cancer TCGA data clinical
2.5 years ago by loughrae ▴ 90
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0
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1.9k
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Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
3.0 years ago by loughrae ▴ 90
0
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1
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1.9k
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Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
3.0 years ago by loughrae ▴ 90
2
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4
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1.9k
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20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
ensembl biomart
3.0 years ago by loughrae ▴ 90
4
votes
6
replies
4.9k
views
Understanding TCGA's ASCAT copy number data
tcga ascat copy number
updated 2.8 years ago by 87k • written 3.1 years ago by ▴ 90
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1
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2.0k
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Comment: C: Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
3.1 years ago by loughrae ▴ 90
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3
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2.0k
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Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
tcga tcgabiolinks r
updated 9 weeks ago by ▴ 10 • written 3.1 years ago by ▴ 90
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1
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982
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Comment: C: to annotate BEDPE files
3.1 years ago by loughrae ▴ 90
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0
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1.6k
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Comment: C: Getting standard 12-column format for a list of genes
3.1 years ago by loughrae ▴ 90
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0
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4.9k
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Comment: C: Understanding TCGA's ASCAT copy number data
3.1 years ago by loughrae ▴ 90
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2
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4.9k
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Comment: C: Understanding TCGA's ASCAT copy number data
3.1 years ago by loughrae ▴ 90
4
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0
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2.4k
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Answer: A: Ggplot2 + Gene Labels
3.1 years ago by loughrae ▴ 90
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1
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2.4k
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Comment: C: Ggplot2 + Gene Labels
3.1 years ago by loughrae ▴ 90
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0
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707
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Answer: A: Error in getBM: accessing Ensembl annotation with biomaRt
3.1 years ago by loughrae ▴ 90
1
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0
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806
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Answer: A: Retrieve initial query in getBM()
3.2 years ago by loughrae ▴ 90
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0
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1.9k
views
Comment: C: How to interpret the gene level copy number file generated by ASCAT2 on GDC?
3.2 years ago by loughrae ▴ 90
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