User: Ankita.narang86

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Posts by Ankita.narang86

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Comment: A: RNASeq DGE : Kallisto-sleuth Vs Ballgown
... Thanks everyone !! your answers are insightful and help me to pursue in a meaningful direction. ...
written 8 hours ago by Ankita.narang860
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RNASeq DGE : Kallisto-sleuth Vs Ballgown
... Hi all, I want to understand - How sleuth is different from ballgown when we do differential gene expression analysis [apart from alignment free vs alignment based reasons]. When i compared both of them, i got reasonably good number of DGEs with sleuth, however, with ballgown i didn't get any di ...
next-gen rna-seq written 5 days ago by Ankita.narang860
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Regarding analysis of stranded RNASeq [TrueSeq , dUTP protocol]
... I have to identify lncRNAs [A pilot study with 4 samples in total I am using Hisat2 and Stringtie for aligning and to find transcripts respectively. I have used intially library type mode --fr (unknowingly) and did analysis and after reading some papers and blogs I realised I have to use --rf rathe ...
alignment rna-seq written 16 days ago by Ankita.narang860

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