User: biodano.geo

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Posts by biodano.geo

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Answer: A: Docking And Molecular Dynamic Simulation ??
... Hi, you can use Bevan Lab tutorial for MD simulation ligand-receptor complex. if you've problems first see Bevan lab Lyzosime in water. if you haven't expertise in unix command, you can go for my tutorial of unix. Link: https://github.com/georopon ...
written 9 months ago by biodano.geo0
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Molecular Docking Parameters
... Hi guys, i'm performing docking using auto dock vina. But I've something problems. I'm doing docking using to ligand and receptor retrieve from PDB ID 1SJ0 , it co-cristallyzed with your ligand. I'm using it for docking assay. But when i run dock in my results original posse / docking posse calcul ...
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Comment: C: Virtual Screening with autodockvina
... please, Can you teach me as use tag? ...
written 11 months ago by biodano.geo0
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Virtual Screening with autodockvina
... Hi, I'm try performed virtual screening with autodockvina but vina only accepted run a ligand at time. I will want run docking of a receptor with multiples ligands ( 10 ligand per run). There is way for do it. Thank. ...
virtual screening autodock autodockvina written 11 months ago by biodano.geo0 • updated 10 months ago by Biostar ♦♦ 20
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Comment: C: Remove hypothetical proteins
... Thank so much i understand. ...
written 11 months ago by biodano.geo0
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Comment: C: Remove hypothetical proteins
... Thank so much. Please you can teach me as understand this awk script. ...
written 11 months ago by biodano.geo0
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Remove hypothetical proteins
... Hi, i want remove all hypothetical proteins from proteome fasta file. i'm used grep -v "hypothetical" proteome.fasta > filtered.fasta , but only remove head line not all (head and sequence of hypothetical proteins). Please help me with awk, perl or python script. ...
fasta grep script written 11 months ago by biodano.geo0 • updated 11 months ago by RamRS22k
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Genome assembly and annotation
... **Hi guys i'm run assembly i want know if you know some paper or guide that involve quality control, trimmim , assembly, statistic and annotation. Please help me.** ...
assembly written 11 months ago by biodano.geo0 • updated 11 months ago by lieven.sterck5.2k

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