User: dan_adams

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dan_adams20
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Posts by dan_adams

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Comment: A: MAKER creating huge index files...
... Hey @genomax, thanks for the suggestion! I had a look into the files it was creating and it turns out they were all for repeat masking, so I (perhaps dangerously) turned it off. Now it runs in seconds! ...
written 8 months ago by dan_adams20
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Answer: A: Obtaining rsIDs using BiomaRt or linux
... This will do (rough and ready): results <- c() # Initialise storage vector for (snp in 1:dim(df)[1]) { #df is the object name of the SNP file chrom <- gsub(pattern = 'chr', replacement = '', x = df[snp, 1]) # Remove 'chr' for searching temp <- ...
written 8 months ago by dan_adams20
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MAKER creating huge index files...
... Hello! I've been trying to use AUGUSTUS to annotate sections of genome that I know contain single genes (initially validating the protocol with model species with known data). Between running AUGUSTUS on just the gene section with no hints and running it with an MSA and exonpart hints (from BLASTi ...
genome augustus alignment maker sequencing written 8 months ago by dan_adams20

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Scholar 8 months ago, created an answer that has been accepted. For A: Obtaining rsIDs using BiomaRt or linux

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