User: L_LANKA
L_LANKA • 0
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Posts by L_LANKA
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... I have a question about genotype and phenotype. So, I have 50 explore objects. For everyone I have phenotype and genotype. I know, that the phenotype correlation with SNP. How can I define homologous or heterozygote associated with phenotype? For example: if object has genotype AA(1) - it's ok, if ...
written 9 weeks ago by
L_LANKA • 0
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Comment:
C: Box plot and genetic data
... Ok, no problem! :) I made a table and a temperature encryption key. ...
written 3 months ago by
L_LANKA • 0
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... Hi!
I have a question about box plot and data. I made the correlation analysis Spearman. I see a positive connection between gene and phenotypic expression. For example, I have gene AAAA where 1 and 3 - homozygous and 2- heterozygote. I have information about temperature and I make graduation this i ...
written 3 months ago by
L_LANKA • 0
• updated
3 months ago by
Hamid Ghaedi • 1.2k
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C: panel of normal files
... https://gatk.broadinstitute.org/hc/en-us/articles/360035531092#2 It can be useful ...
written 4 months ago by
L_LANKA • 0
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Answer:
A: panel of normal files
... > A Panel of Normal or PON is a type of resource used in somatic variant analysis. Depending on the type of variant you're looking for, the PON will be generated differently. What all PONs have in common is that (1) they are made from normal samples (in this context, "normal" means derived from h ...
written 4 months ago by
L_LANKA • 0
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C: Compare many fasta-files
... Thank you so much! I will try to do with CD-HIT. ...
written 4 months ago by
L_LANKA • 0
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... **Hello!**
I have question about compare fasta-files.
**Input:** I have ~11.000 fasta-files. This files are of different length, for example, some files around 29.000 bp but some files around 28.000 bp.
**Output:** I would like have info about unique fasta-files.
For example:
We have 7 fasta- ...
written 4 months ago by
L_LANKA • 0
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... I decided this problem.
When I wrote in script:
system("bwa mem /home/valera/bam/GRCh38_alignment.fa /home/valera/bam/Rep2.fastq.gz > /home/valera/bam/Prob_obr.sam")
It`s work normal. ...
written 5 months ago by
L_LANKA • 0
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... I don't understand what is wrong.
I make index by:
bwa.path <- "/home/valera/Utilits/bwa-0.7.16a/bwa"
system("bwa index -a bwtsw /home/valera/bam/GRCh38_alignment.fa")
and It works good!!!
When It finished worked (It made index), I ran script for sam. It prints again message about err ...
written 5 months ago by
L_LANKA • 0
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... Yes! When I used it in terminal, i wrote:
cd ~/Utilits/bwa-0.7.16a/bwakit
bwa
It`s work normal. ...
written 5 months ago by
L_LANKA • 0
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