User: L_LANKA

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L_LANKA0
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Posts by L_LANKA

<prev • 20 results • page 2 of 2 • next >
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Comment: C: Error: failed to locate the BWA index.
... I don't understand what is wrong. I make index by: bwa.path <- "/home/valera/Utilits/bwa-0.7.16a/bwa" system("bwa index -a bwtsw /home/valera/bam/GRCh38_alignment.fa") and It works good!!! When It finished worked (It made index), I ran script for sam. It prints again message about err ...
written 6 months ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... Yes! When I used it in terminal, i wrote: cd ~/Utilits/bwa-0.7.16a/bwakit bwa It`s work normal. ...
written 6 months ago by L_LANKA0
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Comment: C: Error: failed to locate the BWA index.
... Thank you so mush! I tried use it now. I have error: /home/valera/Utilits/bwa-0.7.16a/bwa: not found and Предупреждение: В system(paste(bwa.path, "-M", index.path, "/home/valera/bam/Rep2.fastq.gz", : ошибка запуска команды ...
written 6 months ago by L_LANKA0
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Error: failed to locate the BWA index.
... Hello! Today I had attempts to write code for automation my pipeline. I tried make It in Jupyter but some packages, for example *os.startfile (path[, operation])*, not intended for Unix sistem. Now I attempt make it in R-studio and I have some questions: 1) How I should run program? For example, I ...
R bwa written 6 months ago by L_LANKA0 • updated 6 months ago by JC12k
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Comment: C: BGI sequencer and his output
... Thank you so much! It's so useful. ...
written 6 months ago by L_LANKA0
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BGI sequencer and his output
... Good day! In the future, I will work with **BGI sequencer.** I have some question about this technology: 1) What type of output file we have after work? In Internet I looked that this fasta but I have some doubts. 2) Can I download files made from this sequencer from internet? I would like constr ...
sequence written 6 months ago by L_LANKA0 • updated 6 months ago by wljlinksly50
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Comment: C: Gencore : /usr/bin/ld: cannot find -lhts
... Thank you for your answer! ...
written 6 months ago by L_LANKA0
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Gencore : /usr/bin/ld: cannot find -lhts
... Good day! I have the problem with install software Gencore. So, then I start install, I have the output: */usr/bin/ld: cannot find -lhts* On the internet I see some fix like : *"We need to edit the Makefile.local file that was generated to specify where the hts library is located"* I don't unders ...
software error written 6 months ago by L_LANKA0 • updated 6 months ago by wljlinksly50
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Comment: C: Gene Position c.
... This information from book about genetics of cows ...
written 8 months ago by L_LANKA0
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Gene Position c.
... Hello! I have some problem with SNP. So, I have information about localization this SNP on chromosome: 11:g.103301489C>A. c.-215C>A I understand that this is the 11 Chr and 103301489 nucleotide but I don`t understand what means c.-215C>A. If you have some information or manual about it, I ...
snp written 8 months ago by L_LANKA0 • updated 8 months ago by Ram32k

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