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Comment: Comment: Which gatk version generates VCF version 4.1
2.7 years ago by taniamahmood38 ▴ 60
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0
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2.0k
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
2.7 years ago by taniamahmood38 ▴ 60
1
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2.4k
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Comment: Comment: Which gatk version generates VCF version 4.1
2.7 years ago by taniamahmood38 ▴ 60
0
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1
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2.0k
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
2.7 years ago by taniamahmood38 ▴ 60
0
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1
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2.0k
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Comment: Comment: HOW CAN I GENERATE VCF VERSION 4.1 USING GATK VERSION 4?
2.7 years ago by taniamahmood38 ▴ 60
1
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6
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Generate VCF version 4.1 using GATK version 4
gatk4.0 vcf4.1
2.7 years ago by taniamahmood38 ▴ 60
0
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1
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2.4k
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Comment: Comment: Which gatk version generates VCF version 4.1
2.7 years ago by taniamahmood38 ▴ 60
0
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1
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2.4k
views
Comment: Comment: Which gatk version generates VCF version 4.1
2.7 years ago by taniamahmood38 ▴ 60
3
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8
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2.4k
views
Which gatk version generates VCF version 4.1
vcf_v4.1 gatk
2.7 years ago by taniamahmood38 ▴ 60
0
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5
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2.1k
views
Error: ##fileformat=VCFv4.2 does not exist
Pharmcat VCF
updated 2.8 years ago by ▴ 480 • written 2.8 years ago by ▴ 60
0
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3
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2.9k
views
How to unzip a file with .bgz extention
.bgz unzip
updated 2.8 years ago by 154k • written 2.8 years ago by ▴ 60
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0
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2.1k
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Comment: Comment: Error: ##fileformat=VCFv4.2 does not exist
2.8 years ago by taniamahmood38 ▴ 60
0
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0
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2.2k
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Comment: Comment: Issue with VCF format while using Pharmcat
2.8 years ago by taniamahmood38 ▴ 60
0
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0
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2.2k
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Comment: Comment: Issue with VCF format while using Pharmcat
2.8 years ago by taniamahmood38 ▴ 60
0
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7
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2.2k
views
Issue with VCF format while using Pharmcat
Pharmcat VCF
2.8 years ago by taniamahmood38 ▴ 60
0
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2
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2.2k
views
Comment: Comment: Issue with VCF format while using Pharmcat
2.8 years ago by taniamahmood38 ▴ 60
0
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1
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1.8k
views
Comment: Comment: Encountering error while using sudo apt-get update command
3.0 years ago by taniamahmood38 ▴ 60
1
vote
3
replies
1.8k
views
Encountering error while using sudo apt-get update command
ubuntu offtopic
updated 3.0 years ago by 56k • written 3.0 years ago by ▴ 60
0
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0
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5.4k
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Comment: Comment: How to install latest version of bcftools on ubuntu?
3.0 years ago by taniamahmood38 ▴ 60
3
votes
2
replies
5.4k
views
How to install latest version of bcftools on ubuntu?
bcftools ubuntu bcftools1.16
updated 2.4 years ago by 45k • written 3.0 years ago by ▴ 60
0
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0
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541
views
Pool-HMM formula
Pool-HMM Python_program
3.1 years ago by taniamahmood38 ▴ 60
0
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0
replies
574
views
Visualization of Pool-HMM results
Pool-HMM graphs
3.2 years ago by taniamahmood38 ▴ 60
0
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0
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1.5k
views
Comment: Comment: Fastq to Fasta format
3.2 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.5k
views
Comment: Comment: Fastq to Fasta format
3.2 years ago by taniamahmood38 ▴ 60
0
votes
4
replies
1.5k
views
Fastq to Fasta format
galaxy fastq fasta
3.2 years ago by taniamahmood38 ▴ 60
0
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0
replies
527
views
How to calculate per site transition probability between hidden states.
-kargument pool-HMM
3.3 years ago by taniamahmood38 ▴ 60
0
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0
replies
551
views
Require DH script
DH TajimasD H-statistics
3.4 years ago by taniamahmood38 ▴ 60
0
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0
replies
597
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD WattersonsTheta
3.4 years ago by taniamahmood38 ▴ 60
0
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0
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664
views
Require combine script of Tajima'sD and Fay and Wu's H stats
H-statistics TajimasD
3.4 years ago by taniamahmood38 ▴ 60
0
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0
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707
views
Require composite script of Hp and ROH statistics
ROH Pooled-heterozygosity github script
3.4 years ago by taniamahmood38 ▴ 60
0
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0
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1.3k
views
Comment: Comment: How to convert VCF into hapmatrix format?
3.5 years ago by taniamahmood38 ▴ 60
0
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1
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1.3k
views
Comment: Comment: How to convert VCF into hapmatrix format?
3.5 years ago by taniamahmood38 ▴ 60
0
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4
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1.3k
views
How to convert VCF into hapmatrix format?
popseq hapmatrix vcf
3.5 years ago by taniamahmood38 ▴ 60
0
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0
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1.3k
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
3.5 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.3k
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
3.5 years ago by taniamahmood38 ▴ 60
1
vote
4
replies
1.3k
views
How to generate bam to vcf containing ancestral allele (AA) information?
ancestral_allele vcf bam
updated 3.5 years ago by 45k • written 3.5 years ago by ▴ 60
0
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0
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2.8k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
3.5 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
727
views
Understanding the output generated using rehh package
sfs Rehh
3.5 years ago by taniamahmood38 ▴ 60
0
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1
reply
2.8k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
3.5 years ago by taniamahmood38 ▴ 60
2
votes
4
replies
2.8k
views
How to add the ancestral allele (AA) information in a vcf file?
AA_tag vcf
3.5 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
533
views
Issue in computing the site frequency spectrum statistics using Rehh package
Rehh R
3.5 years ago by taniamahmood38 ▴ 60
0
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0
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1.4k
views
Comment: Comment: Error in mapply(function(x, y)
3.6 years ago by taniamahmood38 ▴ 60
2
votes
2
replies
1.4k
views
Error in mapply(function(x, y)
rehh R
3.6 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
579
views
Convert pileup file to genetic map file
genetic_map pileup .map
3.6 years ago by taniamahmood38 ▴ 60
0
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0
replies
1.4k
views
Comment: Comment: Problem assigning read group to a sample
3.6 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.4k
views
Comment: Comment: Problem assigning read group to a sample
3.6 years ago by taniamahmood38 ▴ 60
2
votes
4
replies
1.4k
views
Problem assigning read group to a sample
RG_tag popbam bam pooled-seq
3.6 years ago by taniamahmood38 ▴ 60
0
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0
replies
11k
views
Comment: Comment: samtools addreplacerg gives error
3.6 years ago by taniamahmood38 ▴ 60
2
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1
reply
11k
views
Comment: Comment: samtools addreplacerg gives error
3.6 years ago by taniamahmood38 ▴ 60
0
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0
replies
1.3k
views
Comment: Comment: popbam: command not found
3.6 years ago by taniamahmood38 ▴ 60
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