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Comment: Comment: Which gatk version generates VCF version 4.1
13 months ago by taniamahmood38 ▴ 50
0
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0
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952
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
13 months ago by taniamahmood38 ▴ 50
1
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1
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1.2k
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Comment: Comment: Which gatk version generates VCF version 4.1
13 months ago by taniamahmood38 ▴ 50
0
votes
1
reply
952
views
Comment: Comment: Generate VCF version 4.1 using GATK version 4
13 months ago by taniamahmood38 ▴ 50
0
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1
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952
views
Comment: Comment: HOW CAN I GENERATE VCF VERSION 4.1 USING GATK VERSION 4?
13 months ago by taniamahmood38 ▴ 50
1
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6
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952
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Generate VCF version 4.1 using GATK version 4
gatk4.0 vcf4.1
13 months ago by taniamahmood38 ▴ 50
0
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1
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1.2k
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Comment: Comment: Which gatk version generates VCF version 4.1
13 months ago by taniamahmood38 ▴ 50
0
votes
1
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1.2k
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Comment: Comment: Which gatk version generates VCF version 4.1
13 months ago by taniamahmood38 ▴ 50
3
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8
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1.2k
views
Which gatk version generates VCF version 4.1
vcf_v4.1 gatk
13 months ago by taniamahmood38 ▴ 50
0
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5
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1.1k
views
Error: ##fileformat=VCFv4.2 does not exist
Pharmcat VCF
updated 14 months ago by ▴ 480 • written 14 months ago by ▴ 50
0
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3
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1.7k
views
How to unzip a file with .bgz extention
.bgz unzip
updated 14 months ago by 141k • written 14 months ago by ▴ 50
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0
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1.1k
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Comment: Comment: Error: ##fileformat=VCFv4.2 does not exist
14 months ago by taniamahmood38 ▴ 50
0
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0
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1.0k
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Comment: Comment: Issue with VCF format while using Pharmcat
14 months ago by taniamahmood38 ▴ 50
0
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0
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1.0k
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Comment: Comment: Issue with VCF format while using Pharmcat
14 months ago by taniamahmood38 ▴ 50
0
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7
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1.0k
views
Issue with VCF format while using Pharmcat
Pharmcat VCF
14 months ago by taniamahmood38 ▴ 50
0
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2
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1.0k
views
Comment: Comment: Issue with VCF format while using Pharmcat
15 months ago by taniamahmood38 ▴ 50
0
votes
1
reply
1.1k
views
Comment: Comment: Encountering error while using sudo apt-get update command
17 months ago by taniamahmood38 ▴ 50
1
vote
3
replies
1.1k
views
Encountering error while using sudo apt-get update command
ubuntu offtopic
updated 17 months ago by 54k • written 17 months ago by ▴ 50
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0
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2.3k
views
Comment: Comment: How to install latest version of bcftools on ubuntu?
17 months ago by taniamahmood38 ▴ 50
2
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2
replies
2.3k
views
How to install latest version of bcftools on ubuntu?
bcftools ubuntu bcftools1.16
updated 10 months ago by 43k • written 17 months ago by ▴ 50
0
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0
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293
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Pool-HMM formula
Pool-HMM Python_program
18 months ago by taniamahmood38 ▴ 50
0
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0
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310
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Visualization of Pool-HMM results
Pool-HMM graphs
19 months ago by taniamahmood38 ▴ 50
0
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0
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740
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Comment: Comment: Fastq to Fasta format
19 months ago by taniamahmood38 ▴ 50
0
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1
reply
740
views
Comment: Comment: Fastq to Fasta format
19 months ago by taniamahmood38 ▴ 50
0
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4
replies
740
views
Fastq to Fasta format
galaxy fastq fasta
19 months ago by taniamahmood38 ▴ 50
0
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0
replies
288
views
How to calculate per site transition probability between hidden states.
-kargument pool-HMM
21 months ago by taniamahmood38 ▴ 50
0
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0
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299
views
Require DH script
DH TajimasD H-statistics
22 months ago by taniamahmood38 ▴ 50
0
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0
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358
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD WattersonsTheta
22 months ago by taniamahmood38 ▴ 50
0
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0
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367
views
Require combine script of Tajima'sD and Fay and Wu's H stats
H-statistics TajimasD
22 months ago by taniamahmood38 ▴ 50
0
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0
replies
398
views
Require composite script of Hp and ROH statistics
ROH Pooled-heterozygosity github script
23 months ago by taniamahmood38 ▴ 50
0
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0
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685
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Comment: Comment: How to convert VCF into hapmatrix format?
23 months ago by taniamahmood38 ▴ 50
0
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1
reply
685
views
Comment: Comment: How to convert VCF into hapmatrix format?
23 months ago by taniamahmood38 ▴ 50
0
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4
replies
685
views
How to convert VCF into hapmatrix format?
popseq hapmatrix vcf
23 months ago by taniamahmood38 ▴ 50
0
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0
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704
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
23 months ago by taniamahmood38 ▴ 50
0
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1
reply
704
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
23 months ago by taniamahmood38 ▴ 50
1
vote
4
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704
views
How to generate bam to vcf containing ancestral allele (AA) information?
ancestral_allele vcf bam
updated 23 months ago by 43k • written 23 months ago by ▴ 50
0
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0
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1.4k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
23 months ago by taniamahmood38 ▴ 50
0
votes
0
replies
449
views
Understanding the output generated using rehh package
sfs Rehh
23 months ago by taniamahmood38 ▴ 50
0
votes
1
reply
1.4k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
23 months ago by taniamahmood38 ▴ 50
2
votes
4
replies
1.4k
views
How to add the ancestral allele (AA) information in a vcf file?
AA_tag vcf
23 months ago by taniamahmood38 ▴ 50
0
votes
0
replies
311
views
Issue in computing the site frequency spectrum statistics using Rehh package
Rehh R
23 months ago by taniamahmood38 ▴ 50
0
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0
replies
720
views
Comment: Comment: Error in mapply(function(x, y)
24 months ago by taniamahmood38 ▴ 50
2
votes
2
replies
720
views
Error in mapply(function(x, y)
rehh R
24 months ago by taniamahmood38 ▴ 50
0
votes
0
replies
336
views
Convert pileup file to genetic map file
genetic_map pileup .map
2.0 years ago by taniamahmood38 ▴ 50
0
votes
0
replies
754
views
Comment: Comment: Problem assigning read group to a sample
2.0 years ago by taniamahmood38 ▴ 50
0
votes
1
reply
754
views
Comment: Comment: Problem assigning read group to a sample
2.0 years ago by taniamahmood38 ▴ 50
2
votes
4
replies
754
views
Problem assigning read group to a sample
RG_tag popbam bam pooled-seq
2.0 years ago by taniamahmood38 ▴ 50
0
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0
replies
8.2k
views
Comment: Comment: samtools addreplacerg gives error
2.0 years ago by taniamahmood38 ▴ 50
2
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1
reply
8.2k
views
Comment: Comment: samtools addreplacerg gives error
2.0 years ago by taniamahmood38 ▴ 50
0
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0
replies
778
views
Comment: Comment: popbam: command not found
2.0 years ago by taniamahmood38 ▴ 50
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