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Comment: Comment: Which gatk version generates VCF version 4.1
23 months ago by taniamahmood38 ▴ 60
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1.5k
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
23 months ago by taniamahmood38 ▴ 60
1
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1.7k
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Comment: Comment: Which gatk version generates VCF version 4.1
23 months ago by taniamahmood38 ▴ 60
0
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1
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1.5k
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Comment: Comment: Generate VCF version 4.1 using GATK version 4
23 months ago by taniamahmood38 ▴ 60
0
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1
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1.5k
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Comment: Comment: HOW CAN I GENERATE VCF VERSION 4.1 USING GATK VERSION 4?
23 months ago by taniamahmood38 ▴ 60
1
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6
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Generate VCF version 4.1 using GATK version 4
gatk4.0 vcf4.1
23 months ago by taniamahmood38 ▴ 60
0
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1
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1.7k
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Comment: Comment: Which gatk version generates VCF version 4.1
23 months ago by taniamahmood38 ▴ 60
0
votes
1
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1.7k
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Comment: Comment: Which gatk version generates VCF version 4.1
23 months ago by taniamahmood38 ▴ 60
3
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8
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1.7k
views
Which gatk version generates VCF version 4.1
vcf_v4.1 gatk
23 months ago by taniamahmood38 ▴ 60
0
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5
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1.6k
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Error: ##fileformat=VCFv4.2 does not exist
Pharmcat VCF
updated 2.0 years ago by ▴ 480 • written 2.0 years ago by ▴ 60
0
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3
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2.4k
views
How to unzip a file with .bgz extention
.bgz unzip
updated 2.0 years ago by 149k • written 2.0 years ago by ▴ 60
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0
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1.6k
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Comment: Comment: Error: ##fileformat=VCFv4.2 does not exist
2.0 years ago by taniamahmood38 ▴ 60
0
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0
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1.5k
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Comment: Comment: Issue with VCF format while using Pharmcat
2.0 years ago by taniamahmood38 ▴ 60
0
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0
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1.5k
views
Comment: Comment: Issue with VCF format while using Pharmcat
2.0 years ago by taniamahmood38 ▴ 60
0
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7
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1.5k
views
Issue with VCF format while using Pharmcat
Pharmcat VCF
2.0 years ago by taniamahmood38 ▴ 60
0
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2
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1.5k
views
Comment: Comment: Issue with VCF format while using Pharmcat
2.0 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.5k
views
Comment: Comment: Encountering error while using sudo apt-get update command
2.2 years ago by taniamahmood38 ▴ 60
1
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3
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1.5k
views
Encountering error while using sudo apt-get update command
ubuntu offtopic
updated 2.2 years ago by 55k • written 2.2 years ago by ▴ 60
0
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0
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3.9k
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Comment: Comment: How to install latest version of bcftools on ubuntu?
2.2 years ago by taniamahmood38 ▴ 60
3
votes
2
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3.9k
views
How to install latest version of bcftools on ubuntu?
bcftools ubuntu bcftools1.16
updated 20 months ago by 44k • written 2.2 years ago by ▴ 60
0
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0
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398
views
Pool-HMM formula
Pool-HMM Python_program
2.4 years ago by taniamahmood38 ▴ 60
0
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0
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411
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Visualization of Pool-HMM results
Pool-HMM graphs
2.4 years ago by taniamahmood38 ▴ 60
0
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0
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1.1k
views
Comment: Comment: Fastq to Fasta format
2.4 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.1k
views
Comment: Comment: Fastq to Fasta format
2.4 years ago by taniamahmood38 ▴ 60
0
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4
replies
1.1k
views
Fastq to Fasta format
galaxy fastq fasta
2.4 years ago by taniamahmood38 ▴ 60
0
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0
replies
389
views
How to calculate per site transition probability between hidden states.
-kargument pool-HMM
2.6 years ago by taniamahmood38 ▴ 60
0
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0
replies
407
views
Require DH script
DH TajimasD H-statistics
2.7 years ago by taniamahmood38 ▴ 60
0
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0
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462
views
Is Tajima's Pi and Wattersons Theta site frequency spectrum statistics?
TajimasD WattersonsTheta
2.7 years ago by taniamahmood38 ▴ 60
0
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0
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481
views
Require combine script of Tajima'sD and Fay and Wu's H stats
H-statistics TajimasD
2.7 years ago by taniamahmood38 ▴ 60
0
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0
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527
views
Require composite script of Hp and ROH statistics
ROH Pooled-heterozygosity github script
2.7 years ago by taniamahmood38 ▴ 60
0
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0
replies
960
views
Comment: Comment: How to convert VCF into hapmatrix format?
2.7 years ago by taniamahmood38 ▴ 60
0
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1
reply
960
views
Comment: Comment: How to convert VCF into hapmatrix format?
2.7 years ago by taniamahmood38 ▴ 60
0
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4
replies
960
views
How to convert VCF into hapmatrix format?
popseq hapmatrix vcf
2.7 years ago by taniamahmood38 ▴ 60
0
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0
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971
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
2.7 years ago by taniamahmood38 ▴ 60
0
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1
reply
971
views
Comment: Comment: How to generate bam to vcf containing ancestral allele (AA) information?
2.7 years ago by taniamahmood38 ▴ 60
1
vote
4
replies
971
views
How to generate bam to vcf containing ancestral allele (AA) information?
ancestral_allele vcf bam
updated 2.7 years ago by 44k • written 2.7 years ago by ▴ 60
0
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0
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2.0k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
2.7 years ago by taniamahmood38 ▴ 60
0
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0
replies
592
views
Understanding the output generated using rehh package
sfs Rehh
2.7 years ago by taniamahmood38 ▴ 60
0
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1
reply
2.0k
views
Comment: Comment: How to add the ancestral allele (AA) information in a vcf file?
2.7 years ago by taniamahmood38 ▴ 60
2
votes
4
replies
2.0k
views
How to add the ancestral allele (AA) information in a vcf file?
AA_tag vcf
2.7 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
403
views
Issue in computing the site frequency spectrum statistics using Rehh package
Rehh R
2.8 years ago by taniamahmood38 ▴ 60
0
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0
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1.0k
views
Comment: Comment: Error in mapply(function(x, y)
2.8 years ago by taniamahmood38 ▴ 60
2
votes
2
replies
1.0k
views
Error in mapply(function(x, y)
rehh R
2.8 years ago by taniamahmood38 ▴ 60
0
votes
0
replies
446
views
Convert pileup file to genetic map file
genetic_map pileup .map
2.8 years ago by taniamahmood38 ▴ 60
0
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0
replies
1.0k
views
Comment: Comment: Problem assigning read group to a sample
2.8 years ago by taniamahmood38 ▴ 60
0
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1
reply
1.0k
views
Comment: Comment: Problem assigning read group to a sample
2.8 years ago by taniamahmood38 ▴ 60
2
votes
4
replies
1.0k
views
Problem assigning read group to a sample
RG_tag popbam bam pooled-seq
2.8 years ago by taniamahmood38 ▴ 60
0
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0
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9.5k
views
Comment: Comment: samtools addreplacerg gives error
2.8 years ago by taniamahmood38 ▴ 60
2
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1
reply
9.5k
views
Comment: Comment: samtools addreplacerg gives error
2.8 years ago by taniamahmood38 ▴ 60
0
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0
replies
1.0k
views
Comment: Comment: popbam: command not found
2.8 years ago by taniamahmood38 ▴ 60
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