User: gbl1

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gbl130
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Posts by gbl1

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Comment: C: NGS BWA Installing
... error is: dsl-hkibng42-5673d7-72:bwa-0.7.17 benjamin$ install usage: install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] [-o owner] file1 file2 install [-bCcpSsv] [-B suffix] [-f flags] [-g group] [-m mode] [-o owner] file1 ... fileN directory ...
written 1 day ago by gbl130
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Comment: A: NGS BWA Installing
... Hi, I dig it up for I have a small issue. I tried to install but… dsl-hkibng42-5673d7-72:bwa-0.7.17 benjamin$ ./configure -bash: ./configure: No such file or directory I looked, there is no "autogen.sh" but there is a makefile dsl-hkibng42-5673d7-72:bwa-0.7.17 benjamin$ make ...
written 1 day ago by gbl130 • updated 1 day ago by ATpoint12k
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Comment: C: why nucleosome spacing is longer in heterochromatin than euchromatin
... when talking about Heterochromatin, is it constitutive Heterochromatin or facultative Heterochromatin? ...
written 9 days ago by gbl130
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Comment: C: Designing a primer from reads
... Hi, So, I tried on my first set of reads, it has worked perfectly... I will need to sort that out, but it is great! I tried on my second set, I had a bug: Traceback (most recent call last): ...
written 9 days ago by gbl130 • updated 9 days ago by genomax60k
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Comment: C: Designing a primer from reads
... looks lovely! I'm going to try this as soon as possible!!! ...
written 10 days ago by gbl130
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Comment: C: Designing a primer from reads
... I have got from memory 30Gb of reads, this cover 1/3 of unique region I'll look at Mega ;) thanks for the hint ...
written 11 days ago by gbl130
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Comment: C: Designing a primer from reads
... At least you understood the logic I was seeking for ;) For sure it might exist… I can't code that myself… I'm not that good in programming, I'm mostly a molecular biologist… ...
written 11 days ago by gbl130
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Comment: C: Designing a primer from reads
... Sorry, I though I was commenting… ...
written 11 days ago by gbl130
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Comment: A: Designing a primer from reads
... Hi, My message box gave me an answer: 18 hours, 15 minutes ago: genomax wrote on C: Designing a primer from reads : Only way you are going to be able to do this is to align all reads just at `ATCGATCG ` (ignoring bases around this sequence in alignment). Then parse the columnar positions in that ...
written 11 days ago by gbl130
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Comment: C: Designing a primer from reads
... I think the original format is fastq, but I also have them in fasta, and even in a blast DB Primers should be around 22 nucleotides I would like one primer each side (it may have some degenerations, but not 16 N ;) The "CGATCGAT" exemple was a random one, there's several short sequences I migh ...
written 11 days ago by gbl130

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