User: lugonauta

gravatar for lugonauta
lugonauta10
Reputation:
10
Status:
New User
Location:
Last seen:
1 month, 2 weeks ago
Joined:
11 months, 2 weeks ago
Email:
l********@gmail.com

Posts by lugonauta

<prev • 6 results • page 1 of 1 • next >
0
votes
0
answers
93
views
0
answers
Annotate from genbank file
... Hello, I´m trying to annotate a set of phage genomes. I firstly used PHANOTATE in order to predict ORFs. I obtained a .gb file. I want to use this .gb file to predict the functionality of the hypothetical ORFs. I tried to use RASTtk, but I don´t know how to prevent the pipeline from predict ORFs aga ...
annotation phages written 6 weeks ago by lugonauta10 • updated 6 weeks ago by WouterDeCoster39k
1
vote
2
answers
284
views
5 follow
2
answers
Bioinformatic tools for MyCOBIOME analysis.
... Hi friends! I'm interested in perfoming an analysis of the **fungal community** from a set of faecal samples. I have some skills about 16S rDNA amplicon approach for Microbiome analysis, using QIIME2, but I'm completely neofyte in the Mycobiome world. Could anyone explain me how to perform such kind ...
bioinformatics amplicon its fungi sequencing written 6 months ago by lugonauta10 • updated 6 months ago by ashishbansal123000
0
votes
0
answers
288
views
0
answers
Comment: C: Neophyte in WGS. Advise for an hypothetical pipeline.
... OK, I will try to exclude small contigs mapping it against a reference genome (using mauves). Anyway, would you recommend me any software to re-assemble contigs into scaffolds? Thanks ...
written 9 months ago by lugonauta10
2
votes
0
answers
288
views
0
answers
Neophyte in WGS. Advise for an hypothetical pipeline.
... Hi everyone, I'm new in WGS, in fact it is my first time! I´m trying to sequence a Lactobacillus fermentum strain. I would like to deposit it on GenBank, so I need to obtain a robust and reliable final product, but it is not necessary to close the genome (maybe a draft genome composed by 100-200 con ...
genome assembly written 9 months ago by lugonauta10 • updated 9 months ago by genomax68k
0
votes
4
answers
929
views
4
answers
Comment: C: Buy PC for metagenomics
... Hi, sorry about not be as concrete as I should. Our goal is to support the needs of our clinical microbiology laboratory, therefore we would not have a constant activity on a large scale. None of us have broad experience in bioinformatics nor NGS (we about to finish the residency training program in ...
written 11 months ago by lugonauta10
9
votes
4
answers
929
views
5 follow
4
answers
Buy PC for metagenomics
... Hi everyone, I'm new in bioinformatics. I'm working in a clinical microbiology laboratory, and my chief wants to stablish a sequencing department for clinical and research purposes (whole genome sequencing for studying outbreaks, 16s metagenomics for studying microbiota, etc). We want to buy a des ...
genome assembly next-gen alignment written 11 months ago by lugonauta10 • updated 10 months ago by MetaTK20

Latest awards to lugonauta

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2064 users visited in the last hour