User: lugonauta

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lugonauta10
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Posts by lugonauta

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Comment: C: Neophyte in WGS. Advise for an hypothetical pipeline.
... OK, I will try to exclude small contigs mapping it against a reference genome (using mauves). Anyway, would you recommend me any software to re-assemble contigs into scaffolds? Thanks ...
written 23 days ago by lugonauta10
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Neophyte in WGS. Advise for an hypothetical pipeline.
... Hi everyone, I'm new in WGS, in fact it is my first time! I´m trying to sequence a Lactobacillus fermentum strain. I would like to deposit it on GenBank, so I need to obtain a robust and reliable final product, but it is not necessary to close the genome (maybe a draft genome composed by 100-200 con ...
genome assembly written 26 days ago by lugonauta10 • updated 26 days ago by genomax55k
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Comment: C: Buy PC for metagenomics
... Hi, sorry about not be as concrete as I should. Our goal is to support the needs of our clinical microbiology laboratory, therefore we would not have a constant activity on a large scale. None of us have broad experience in bioinformatics nor NGS (we about to finish the residency training program in ...
written 11 weeks ago by lugonauta10
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Buy PC for metagenomics
... Hi everyone, I'm new in bioinformatics. I'm working in a clinical microbiology laboratory, and my chief wants to stablish a sequencing department for clinical and research purposes (whole genome sequencing for studying outbreaks, 16s metagenomics for studying microbiota, etc). We want to buy a des ...
genome assembly next-gen alignment written 11 weeks ago by lugonauta10 • updated 6 weeks ago by MetaTK10

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