User: genious.kalia.141198

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Posts by genious.kalia.141198

<prev • 11 results • page 1 of 2 • next >
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Comment: C: How to check qulaity of genomes present at NCBI?
... I'm talking about the genomes present at GenBank only. I have the complete genomes but still, I want to check their quality? ...
written 5 weeks ago by genious.kalia.1411980
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How to check qulaity of genomes present at NCBI?
... Hello I want to know how we can check the quality of the genomes present at the NCBI. I'm interested to check the following: **N50, L50, fine consistency, genome contamination, coarse consistency.** I have a few questions w.r.t this: 1. As I was checking a few tools to do the same as QUAST, the ...
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Comment: C: How can I Extract PMID only for a query in a text file while searching it on NCB
... thanks for helping me. but I'm getting this error "WebEnv value not found in fetch input" ...
written 15 months ago by genious.kalia.1411980
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How can I Extract PMID only for a query in a text file while searching it on NCBI pubmed?
... Hello all. I have search ***"mycobacterium avium complex"*** at NCBI pubmed and I got **5963** results. I just want to **extract only the PMID** of all these 5963 papers in a file, can be a text file. Is it is possible or not, if possible please help me in doing the same. Thanks. ...
sequence alignment extraction next-gen literature written 15 months ago by genious.kalia.1411980 • updated 8 months ago by mrpfd3v0
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Protein categorization using COG
... Hello all. I have a bacterial genome sequence (size 4.0-7.0) , i need to annotate it according to the 17 categories of COG, can I use COG soft (https://sourceforge.net/projects/cogtriangles/files/) for the same purpose or is there any other method or tool available for doing same. Has anybody co ...
genome gene alignment sequence written 21 months ago by genious.kalia.1411980 • updated 19 months ago by harish280
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Comment: C: Error while using MPI-BLAST
... `yeah, i resolved this.. but MPI-BLAST still generating errors.` mpiexec -n 3 mpiblast -p blastn -d mpiblast/all_ASM.fna -i /home/ntm/samples/test_data/100/100.fasta -o /home/ntm/samples/test_data/100/r_100.txt [blastall] WARNING: NZ_CP009614.1_0000000001: Unable to open all_ASM.fna.000.nin [blas ...
written 22 months ago by genious.kalia.1411980
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Comment: C: Error while using MPI-BLAST
... yes, i did. just after my formatted database get ready i copied all the files to the location you mentioned. ...
written 22 months ago by genious.kalia.1411980
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Error while using MPI-BLAST
... I installed MPI-BLAST in linux (ubuntu 16.04) , but while running query its generates an error, which may be pointed towards DATABASE. **to create database i ran this query:** $mpiformatdb -N 16 -i /home/ntm/Downloads/MPI_BLAST_MTB_ASM/all_ASM.fna -o /home/ntm/mpiblast/mtb_ASM **result was:** ...
genome software error alignment sequencing written 22 months ago by genious.kalia.1411980 • updated 22 months ago by Sej Modha4.7k
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Comment: C: How can I add an incremented value just after Accession no. ?
... i think seqkit is not installed thats why generating error. command not found. ...
written 22 months ago by genious.kalia.1411980
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Comment: C: How can I add an incremented value just after Accession no. ?
... thank you so much it works.. ...
written 22 months ago by genious.kalia.1411980

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