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questions
2
votes
3
replies
1.4k
views
How to correlate phenotype values with gene expression levels
phenotype
gene expression
updated 5.0 years ago by
Asaf
10k • written 5.0 years ago by
afli
▴ 190
0
votes
5
replies
3.2k
views
Downstream proportions are not identical in vennpie and upsetplot results
ChIPseeker
upsetplot
R
updated 5.0 years ago by
zx8754
12k • written 6.2 years ago by
afli
▴ 190
4
votes
3
replies
1.7k
views
How to creat *over.chain.gz file
liftover
chain file
updated 5.3 years ago by
Biostar
20 • written 5.3 years ago by
afli
▴ 190
0
votes
2
replies
2.2k
views
How to install tcl/tk in R in linux without root permission
R
linux
tcl/tk
5.4 years ago by
afli
▴ 190
4
votes
3
replies
4.1k
views
How to analyse TXT format microarray data
TXT
microarray
updated 5.6 years ago by
Friederike
9.0k • written 5.6 years ago by
afli
▴ 190
8
votes
3
replies
1.9k
views
How to study gene expression network?
network
gene-expression
updated 18 months ago by
Ram
44k • written 5.6 years ago by
afli
▴ 190
7
votes
10
replies
7.4k
views
6 follow
RNA-seq mapping rate
RNA-seq
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
afli
▴ 190
8
votes
7
replies
2.5k
views
Too few differentially expressed genes identified by edgeR
edgeR
5.9 years ago by
afli
▴ 190
2
votes
4
replies
1.7k
views
Software to visualize ChIP-seq peak file
ChIP-Seq
visualization
5.9 years ago by
afli
▴ 190
2
votes
4
replies
4.1k
views
Tutorial for analysing gpr files of microarray
GPR
microarray
updated 6 months ago by
bioyas
▴ 10 • written 5.9 years ago by
afli
▴ 190
4
votes
5
replies
3.7k
views
very low Bowtie2 mapping rate
bowtie2
5.9 years ago by
afli
▴ 190
2
votes
4
replies
2.3k
views
How to identify differential expressed genes if the normalization assumptions are violated
DESeq2
EdgeR
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
afli
▴ 190
1
vote
5
replies
3.1k
views
Compare expression of one group to the mean of others using DESeq2
DESeq2
6.0 years ago by
afli
▴ 190
1
vote
3
replies
1.6k
views
Bowtie2 reads alignment question
Bowtie2
updated 6.0 years ago by
Biostar
20 • written 6.0 years ago by
afli
▴ 190
3
votes
4
replies
2.6k
views
How to define and use samples of WGCNA
WGCNA
6.0 years ago by
afli
▴ 190
1
vote
10
replies
2.8k
views
RNA-seq analysis of two species
RNA-seq
two species
updated 6.0 years ago by
Charles Warden
8.3k • written 6.0 years ago by
afli
▴ 190
6
votes
21
replies
3.1k
views
How to evaluate the similarity of genes between two sample
RNA-Seq
differential
updated 6.0 years ago by
Biostar
20 • written 6.2 years ago by
afli
▴ 190
4
votes
6
replies
1.5k
views
Different result from WGCNA tutorial I
WGCNA
updated 6.0 years ago by
Kevin Blighe
88k • written 6.0 years ago by
afli
▴ 190
0
votes
2
replies
1.4k
views
Kallisto and homologous genes expression
kallisto
honologous genes
ASE
6.1 years ago by
afli
▴ 190
7
votes
9
replies
3.9k
views
Why my pvalue histogram doesn't have uniform distribution
pvalue
uniform distribution
fisher exact test
updated 6.2 years ago by
chrchang523
11k • written 6.2 years ago by
afli
▴ 190
0
votes
3
replies
1.3k
views
Pvalue Histgram is a Bit U Shaped for Binom.test
Pvalue
Binom.test
updated 6.2 years ago by
Devon Ryan
104k • written 6.2 years ago by
afli
▴ 190
3
votes
19
replies
3.1k
views
A Strange Error of DESeq2 Analysis(modified: DESeq2 does not Point Out the Obvious Difference)
DESeq2
pvalue
6.2 years ago by
afli
▴ 190
0
votes
1
reply
1.1k
views
How to get false positive rate of JASPAR motifs
JASPAR
fpr
false positive rate calculation
updated 6.2 years ago by
ATpoint
84k • written 6.2 years ago by
afli
▴ 190
1
vote
4
replies
2.9k
views
How to get the all the overlap information of a peak in ChIPseeker
ChIPseeker
detail information of peak
6.2 years ago by
afli
▴ 190
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